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Native Fishes of the Sacramento-San Joaquin Drainage, California: A History of Decline. (Rinne, J. N., Hughes R. M., & Calamusso B., Ed.).Historical Changes in Large River Fish Assemblages of the Americas. 45, 75-98.(2005).
Biology, management, and conservation of lampreys in North America. American Fisheries Society Symposium . 72, 321.(2010).
The geomorphic dynamics of an upper deltaic floodplain tract in the Sacramento-San Joaquin Delta, California, USA. Earth Surface Processes and Landforms. 29,(2004).
Status of coho salmon (Oncorhynchus kisutch) in California. North American Journal of Fisheries Management . 14, 237-261.(1994).
California Water Supply and Reservoir Storage for Warmer vs. Warmer-Drier Climate Conditions. World Environmental and Water Resources Congress 2011. 1365-1374.(2011).
Making a precarious perch more secure: Central Valley farm ponds for native fish conservation. Sustainable Agriculture . 18(3),(2006).
Maximizing the ecological contribution of conservation banks. Wildlife Society Bulletin. 38(2), 377–385.(2014).
Household water use and conservation models using Monte Carlo techniques. Hydrol. Earth Syst. Sci. . 10(4),(2013).
Residential Water Conservation in Australia and California. Journal of Water Resources Planning and Management. 139(1), 117-121.(2013).
Historical and recent population sizes of spring-run chinook salmon in California. (Hassler, T. J., Ed.).Proceedings, Northeast Pacific Chinook and Coho Salmon Workshop. 155-216.(1991).
Response of stream invertebrates to short-term salinization: A mesocosm approach. Environmental Pollution. 166, 144-151.(2012).
Preface. (Carey, J.R., Moyle P. B., RejmÃ¡nek M., & Vermeij G., Ed.).Biological Conservation, Invasion biology. 78, 1 - 2.(1996).
Long-term captive breeding does not necessarily prevent reestablishment: lessons learned from Eagle Lake rainbow trout. Reviews in Fish Biology and Fisheries. 22(1), 325-342.(2012).
Brook Trout Removal as a Conservation Tool to Restore Eagle Lake Rainbow Trout. North American Journal of Fisheries Management. 30(5), 1315-1323.(2010).
Re-establishment of the natural life histories of Eagle Lake rainbow trout, USA. (Soorae, P. S., Ed.).Global Re-introduction Perspectives: 2013. Further case studies from around the globe. 21-25.(2013).
Uncertainty and instream flow standards. Fisheries. 21(8), 20–21.(1996).
Ethics, ecology, and economics in river management: the benefits of working together. (K, D. C., & McGinn R. E., Ed.).Navigating rough waters: ethical issues in the water industry. 157-176.(2001).
Current and Long-Term Effects of Delta Water Quality on Drinking Water Treatment Costs from Disinfection Byproduct Formation. San Francisco Estuary and Watershed Science. 8(3),(2010).
Adapting California's Ecosystems to a Changing Climate. BioScience. 65(3), 247–262.(2015).
Updating the CALVIN Hydro-Economic Optimization Model of California : Central Valley Groundwater. World Environmental and Water Resources Congress 2012. 2482-2490.(2012).
Water wasted to the sea? . San Francisco Estuary and Watershed Science. 15(2),(2017).
Summary of data and analyses indicating that exotic species have impaired the beneficial uses of certain California waters.(2004).
Estuarine-terrestrial habitat gradients enhance nursery function for resident and transient fishes in the San Francisco Estuary. Marine Ecology Progress Series. 637,(2020).
Tidal effects on marsh habitat use by three fishes in the San Francisco Estuary. Environmental Biology of Fishes.(2020).
Groundwater Database for California, Poster. California Water and Environmental Modeling Forum.(2010).
Adaptation to Climate Change.. California Water and Environmental Modeling Forum.(2010).
Adapting California's Water System to Warm vs. Dry Climates. (Medellín-Azuara, J., Ed.).Climatic Change. 109(S1),(2012).
Zooplankton ecology and trophic resources for rearing native fish on an agricultural floodplain in the Yolo Bypass California, USA. Wetlands Ecology and Management. 25, 533–545.(2017).
Wilderness and fisheries. A Supplement to Wilderness Record. July-August, 8pp.(1979).
Crimes against biodiversity: the lasting legacy of fish introductions. Transactions of the 57th North American Wildlife and Natural Resource Conference. 57, 365-372.(1992).
Use of a restored central California floodplain by larvae of native and alien fishes. Early Life History of Fishes in the San Francisco Estuary and Watershed. 125-140.(2004).
Biology, History, Status, and Conservation of Sacramento Perch, Archoplites interruptus: A Review . San Francisco Estuary and Watershed Science. 9(1),(2011).
Life history of splittail (Cyprinidae: Pogonichthys macrolepidotus) in the Sacramento-San Joaquin Estuary. Fishery bulletin United States. 81, 647-654.(1983).
Biology, Distribution and Status of Cottus asperrimus in the Pit River Drainage, Northeastern California. Copeia. 1978(4), 673-679.(1978).
Geographic Variation and a Taxonomic Reappraisal of the Marbled Sculpin, Cottus klamathensis. Copeia. 1984(4), 949-959.(1984).
Listening in on the past: What can otolith δ18O values really tell us about the environmental history of fishes?. PLoS ONE. 9(10),(2014).
Wetlands. Ecosystems of California. p 669-692,(2016).
Physical controls on the distribution of the submersed aquatic weed Egeria densa in the Sacramento-San Joaquin Delta and implcations for habitat.. San Francisco Estuary and Watershed Science. 14(1),(2016).
A conceptual model of the aquatic food web of the upper San Francisco Estuary. San Francisco Estuary and Watershed Science . 13(5),(2015).
Novel ecosystems? Changes in the Kobuk River basin (AK) and the Sacramento-San Joaquin Delta (CA), USA.(2011).
Environmental heterogeneity and community structure of the Kobuk River, Alaska, in response to climate change. Ecosphere. 2(4), 1-19.(2011).