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O
O'Rear, T., & Moyle P. B. (2014).  Fishes and aquatic macroinvertebrates. Suisun Marsh - ecological history and possible futures.
O'Rear, T., & Moyle P. B. (2015).  Suisun Marsh Fish Study: Trends in fish and invertebrate populations of Suisun Marsh January 2013 - December 2013. PDF icon Suisun Marsh Fish Report 2013 Final No Appendix.pdf (1.67 MB)PDF icon Suisun Marsh Fish Report 2013 Appendix.pdf (68.56 KB)
O'Rear, T. (2018).  Delta Smelt and Salmon Habitats Beyond the Estuary. (Moyle, P. B., & Durand J. R., Ed.). PDF icon Delta Smelt Salmon Beyond Estuary (BDSC) - 1 of 2.pdf (1.68 MB)PDF icon Delta Smelt Salmon Beyond Estuary (BDSC) - 2 of 2.pdf (1.6 MB)PDF icon Delta Smelt and Salmon Beyond the Estuary - Abstract.pdf (95.01 KB)
O'Rear, T., & Moyle P. B. (2009).  Trends in fish populations of Suisun Marsh January 2008 - December 2008.
O'Rear, T. (2012).  Diet of an introduced estuarine population of white catfish in California. PDF icon ORear Thesis Final.pdf (1.25 MB)
O'Rear, T., & Moyle P. B. (2010).  Long term and recent trends in fishes and invertebrates in Suisun Marsh. Interagency Ecological Program Newsletter. 23(2), 
O'Rear, T., & Moyle P. B. (2013).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2012 - December 2012.
O'Rear, T., & Moyle P. B. (2008).  Trends in fish populations of Suisun Marsh January 2006 - December 2007.
O'Rear, T., Karres N., & Sloop C. (2009).  2008 Laguna de Santa Rosa aquatic community survey.
O'Rear, T., Moyle P. B., & Durand J. R. (2019).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2017 - December 2017. PDF icon Suisun Marsh Fish Report 2017 Final - No Appendix (low res).pdf (2 MB)PDF icon Suisun Marsh Fish Report 2017 Final - Appendix (low res).pdf (398.3 KB)
O'Rear, T., & Moyle P. B. (2012).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2011 - December 2011.
O'Rear, T. (2016).  Suisun Marsh's overbite clams and Black Sea jellyfish. PDF icon Suisun Marsh Clams Jellies BDSC 2016 Final.pdf (1.21 MB)
O'Rear, T., & Moyle P. B. (2017).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2015 - December 2015. PDF icon Suisun Marsh Fish Report 2015 Final - A.pdf (1.44 MB)PDF icon Suisun Marsh Fish Report 2015 Final - B.pdf (789.71 KB)
O'Rear, T., & Moyle P. B. (2013).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2010 - December 2010.
O'Rear, T., & Moyle P. B. (2015).  White catfish and adult striped bass diets in Suisun Marsh. PDF icon ORear CA NV AFS Presentation Striped Bass White Catfish Diets 2015 Final.pdf (1.94 MB)
O'Rear, T., & Moyle P. B. (2015).  Suisun Marsh Fish Study: Trends in fish and invertebrate populations of Suisun Marsh January 2014 - December 2014. PDF icon Suisun Marsh Fish Report 2014 Final.pdf (1.97 MB)
O'Rear, T., Durand J. R., & Moyle P. (2018).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2016 - December 2016. PDF icon Suisun Marsh Fish Report 2016 Final.pdf (1.77 MB)
O'Rear, T., & Moyle P. B. (2013).  Trends in fish and invertebrate populations of Suisun Marsh January 2009 - December 2009.
Opperman, J.J., Moyle P. B., Larsen E.W., Florsheim J.L., & Manfree A. D. (2017).  Floodplains: Processes and Management for Ecosystem Services. 258.
Opperman, J.J., & Moyle P. B. (2005).  A conceptual model for floodplain restoration. Flood Management Association News . 15(4), 7-10.
Oxman, DS., Barnett-Johnson R., Smith M., Coffin SM., Miller D., Josephson R., et al. (2007).  The effect of vaterite deposition on sound reception, otolith morphology, and inner ear sensory epithelia in hatchery-reared Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences. 64,
O’Rear, TA., & Moyle P. B. (2010).  Long term and recent trends of fishes and invertebrates in Suisun Marsh. 23(2), 26-49.
O’Rear, T., & Moyle P. B. (2015).  Diets of two alien predators - adult striped bass and white catfish - in Suisun Marsh. PDF icon ORear CA NV AFS Presentation Striped Bass White Catfish Diets2015.pdf (2.89 MB)
P
Parker, I.M., Simberloff D., Lonsdale W.M., Goodell K., Wonham M., Kareiva P.M., et al. (1999).  Impact: Toward a Framework for Understanding the Ecological Effects of Invaders. Biological Invasions. 1(1), 3-19.
Peek, R. A., Bedwell M., O'Rourke S. M., Goldberg C., Wengert G. M., & Miller M. R. (2019).  Hybridization between two parapatric ranid frog species in the northern Sierra Nevada, California, USA. Molecular ecology. 28, 4636–4647.
Perales, M., Rowan J., & Moyle P. B. (2015).  Evidence of Landlocked Chinook Salmon Populations in California. North American Journal of Fisheries Management. 35(6), PDF icon Perales_Salmon.pdf (498.87 KB)
Phillis, C.C., Sturrock A.M., Johnson RC., & Weber P.K. (2018).  Endangered winter-run Chinook salmon rely on diverse rearing habitats in a highly altered landscape.. Biological Conservation. 217, PDF icon Phillis_et_al_2017_Biological_Conservation.pdf (907.84 KB)
Pinter, N., Brasington J., Gurnell A., Kondolf G. Matthias, Tockner K., Wharton G., et al. (2019).  River research and applications across borders. River Research and Applications. early view online,
Pinter, N., Huthoff F., Dierauer J., Remo W.F., & Damptz A. (2016).  Modeling residual flood risk behind levees, Upper Mississippi River, USA. Environmental Science & Policy. 58(131-140), PDF icon PinterEtAl2016.pdf (517.19 KB)
Podolak, K., & Yarnell S. M. (2015).  Adaptive management in Federal Energy Regulatory Commission relicensing. The Water Sustainability Reader: Lessons from California for the 21st Century. 193-211.
Power, M. E., R. Stout J., Cushing C. E., Harper P. P., F. Hauer R., Matthews W. J., et al. (1988).  Biotic and Abiotic Controls in River and Stream Communities. Journal of the North American Benthological Society. 7(4), 456-479.
Prine, J.E., Lawley G.E., & Moyle P. B. (1975).  A multidisciplinary approach to vector ecology at Clear Lake, California. Bulletin of the Society of Vector Ecologists . 2, 21-31.
Purdy, S. E., Moyle P. B., & Tate K. W. (2012).  Montane meadows in the Sierra Nevada: comparing terrestrial and aquatic assessment methods. Environmental Monitoring and Assessment. 184(11), 6967-6986.
Purdy, S., & Moyle P. B. (2009).  Mountain Meadows of the Sierra Nevada: An Integrated Means of Determining Ecological Condition in Mountain Meadows—Protocols and Results from 2006..
Purdy, S. (2011).  Monitoring Approaches for Fisheries and Meadow Restorations in the Sierra Nevada of California.
Purdy, S. (2010).  Montane Meadows in the Sierra Nevada: A Comparison of Terrestrial and Aquatic Assessment Methods. Ecology. Master of Science, 45.
Q
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. PDF icon Quinones et al 2014 dam removal.pdf (639.53 KB)
Quiñones, R. M., & Johnson M. L. (2014).  Hatchery practices may result in replacement of wild salmonids: adult trends in the Klamath basin, California. Environmental Biology of Fishes. 97(3), 233-246.PDF icon Quiñones et al 2013.pdf (486.04 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. PDF icon Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California (655.17 KB)
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California. PLOS One. 9(5), PDF icon journal.pone_.0098392.pdf (702.76 KB)
Quiñones, R. M., & Moyle P. B. (2014).  Climate change vulnerability of freshwater fishes in the San Francisco Bay Area. San Francisco Estuary and Watershed Science. 12(3), PDF icon Quinones and Moyle 2014 cc in SFBA.pdf (324.79 KB)
Quiñones, R. M. (2011).  Synthesis of the effects to fish species of two management scenarios...on removal of the lower four dams on the Klamath River. PDF icon Dam removal Klamath River (1.04 MB)
Quiñones, R. M., & Moyle P. B. (2015).  California’s freshwater fishes: status and management. FISHMED Fishes in Mediterranean Environments. 20p.PDF icon Complete study (1.46 MB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2015).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. 25(1), 195-215.
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential factors affecting survival differ by run-timing and location: linear mixed-effects models of Pacific salmonids (Oncorhynchus spp.) in the Klamath River, California. PDF icon Quinones et al 2014 survival linear mixed-effects models.pdf (689.29 KB)