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Conference Paper
Medellín-Azuara, J., & Lund J. R. (2005).  Systems Analysis for Restoring the Lower Colorado River Delta. 2005 International Law Conference: Freshwater Ecosystem Restoration: The Role of Law Process and Lawyers.
Medellín-Azuara, J., Hanak E., Howitt R., & Lund J. R. (2012).  Transitions for the California Delta Economy. California Water and Environmental Modeling Forum.
Hanak, E., & Medellín-Azuara J. (2012).  Transitions for the California Delta Economy. An Assessment of Planning Priorities. Sacramento Economics Roundtable.
Medellín-Azuara, J., Howitt R., & Lund J. R. (2010).  Transitions in the Structure of the Delta's Economy. California Water and Environmental Modeling Forum.
Medellín-Azuara, J. (2009).  Urban Water Demand Analysis of Five Border Cities of Northwestern Mexico.
Gailey, R., & Jones D.E. (1987).  The Use of Sediment Permeability Variations in the Performance of Petroleum Recovery from Glacial Sediments. Proc. of the Focus on Eastern Regional Groundwater Issues.
Medellín-Azuara, J., Madani K., Connell C., Bates M., Sicke W. S., & Lund J. R. (2010).  The Water 2.0 Social Calendar. California Water and Environmental Modeling Forum.
Ragatz, R., Lund J. R., Medellín-Azuara J., Bartolomeo E., Sicke W. S., Bates M., et al. (2011).  Water Management Costs and Adaptations with Delta Restrictions, Climate Change and Expanded Urban Water Conservation. California Water and Environmental Modeling Forum.
Waller-Barrera, C., Mendoza-Espinosa L., Medellín-Azuara J., & Lund J. R. (2008).  Water management optimization for urban and agricultural use in semiarid Mexico. 1st IWA Mexico National Young Water Professionals Conference.
Medellín-Azuara, J., Mendoza-Espinosa L., & Lund J. R. (2008).  Water supply for Baja California -development of CALVIN planning model, México. Border Infrastructure Conference.
Howitt, R., Lund J. R., Medellín-Azuara J., MacEwan D., & Garnache C. (2012).  Yolo Bypass and Floodplains: Land Use and Economic Value. Flood Risk Assessment Group.
Government Report
Harter, T., Lund J. R., Darby J., Fogg G., Howitt R., Jessoe K., et al. (2012).  Addressing Nitrate in California’s Drinking Water with a Focus on Tulare Lake Basin and Salinas Valley Groundwater. Report for the State Water Resources Control Board Report to the Legislature. 80.
De Souza, S., Medellín-Azuara J., Burley N., Lund J. R., & Howitt R. (2011).  Beneficiary Pays Analysis of Water Recycling Projects. PDF icon Beneficiary Pays Analysis for Water Recycling Projects (274.13 KB)
Howitt, R., Kaplan J., Larson D., MacEwan D., Medellín-Azuara J., Horner G., et al. (2008).  Central Valley Salinity Report.
Moyle, P. B., Bennett W. A., Dahm C., Durand J. R., Enright C., Fleenor W. E., et al. (2010).  Changing ecosystems: a brief ecological history of the Delta. 7.
Medellín-Azuara, J., Harou J., Olivares M., Lund J. R., Howitt R., Tanaka S., et al. (2006).  Climate Warming and Water Supply Management in California.
Fleenor, W. E., Bennett W. A., Moyle P. B., & Lund J. R. (2010).  On developing prescriptions for freshwater flows to sustain desirable fishes in the Sacramento-San Joaquin Delta. 46.PDF icon Fish_Flows_for_the_Delta_15feb2010.pdf (772.13 KB)
Fleenor, W. E., Bennett W. A., Moyle P. B., & Lund J. R. (2010).  On developing prescriptions for freshwater flows to sustain desirable fishes in the Sacramento-San Joaquin Delta. 46.
Moyle, P. B. (1991).  Ecology of introduced fishes and aquatic invertebrates in North America. (Yount, J. D., Ed.). 1-3.
Herbold, B., & Moyle P. B. (1989).  The Ecology of the Sacramento-San Joaquin Delta: a Community Profile.. U.S. Fish and Wildlife Service Biological Report . 85(7.22), 106.
Moyle, P. B., Yoshiyama R. M., Williams J. E., & Wikramanayake E. D. (1995).  Fish species of special concern in California. 272.
De Souza, S., Medellín-Azuara J., Burley N., Lund J. R., & Howitt R. (2011).  Guidelines for Preparing Economic Analysis for Water Recycling Projects. PDF icon Economic Analysis Guidance Document (308.4 KB)PDF icon Economic Analysis Guidance Document (Appendix Set) (132.14 KB)
Moyle, P. B. (1982).  Keys to the inland fishes of California. 34, 16pp.
O’Rear, TA., & Moyle P. B. (2010).  Long term and recent trends of fishes and invertebrates in Suisun Marsh. 23(2), 26-49.
Fleenor, W. E., & Ji P. (2011).  Predicting Electrical Conductivity in the South Delta using Multivariate Regression . 122pp.PDF icon SWRCB Salinity Regression Report.pdf (1.87 MB)
Moyle, P. B., Pine R., Brown L. R., Hanson C.H., Herbold B., Lentz K.M., et al. (1996).  Recovery plan for the Sacramento-San Joaquin Delta native fishes. 193.
Healey, M., Kimmerer W., Kondolf GM., Meade R., Moyle P. B., & Twiss R. (1998).  Strategic plan for the Ecosystem Restoration Program. 252.
Cohen, A. N., & Moyle P. B. (2004).  Summary of data and analyses indicating that exotic species have impaired the beneficial uses of certain California waters.
Hamilton, J., Rondorf D., Hamptonn M., Quiñones R. M., Simondet J., & Smith T. (2011).  Synthesis of the effects to fish species of two management scenarios for the Secretarial Determination on removal of the lower four dams on the Klamath River. PDF icon Hamilton et al 2011.pdf (1.05 MB)
Journal Article
Grantham, T. E., & Viers J. H. (2014).  100 years of California’s water rights system: patterns, trends and uncertainty. Environmental Research Letters. 9, 10pp.PDF icon WaterRights_UCDavis_study.pdf (1.34 MB)
Wintzer, A. P., Meek M. H., & Moyle P. B. (2013).  Abundance, size, and diel feeding ecology of Blackfordia virginica (Mayer, 1910), a non-native hydrozoan in the lower Napa and Petaluma Rivers, California (USA). Aquatic Invasions. 8(2), 147–156.
Medellín-Azuara, J., Harou J. J., Olivares M., Madani K., Lund J. R., Tanaka S., et al. (2008).  Adaptability and Adaptations of California's Water Supply System to Dry Climate Warming. Climatic Change. 87(S1), 
Chornesky, E. A., Ackerly D. D., Beier P., Davis F. W., Flint L. E., Lawler J. J., et al. (2015).  Adapting California's Ecosystems to a Changing Climate. BioScience. 65(3), 247–262.
Connell-Buck, C., Lund J. R., & Madani K. (2012).  Adapting California's Water System to Warm vs. Dry Climates. (Medellín-Azuara, J., Ed.).Climatic Change. 109(S1), 
Lund, J. R., & Moyle P. B. (2013).  Adaptive Management and Science for the Delta Ecosystem. San Francisco Estuary and Watershed Science. 11(3), 
Lund, J. R., & Gold et. al A. J. (2013).  Advancing water resource management in agricultural, rural, and urbanizing watersheds: Why land-grant universities matter. Journal of Soil and Water Conservation. 68(4), 337-348.PDF icon Journal of Soil and Water Conservation-2013-Gold-337-48.pdf (680.41 KB)
Sumner, D., Hanak E., Mount JF., Medellín-Azuara J., Lund J. R., Howitt R., et al. (2015).  Agricultural Irrigation in This Drought: Where Is the Water and Where Is It Going?. Agricultural and Resources Economics Update. 18(5), 6-8.
Medellín-Azuara, J., Howitt R., Hanak E., Lund J. R., & Fleenor W. E. (2014).  Agricultural Losses from Salinity in California's Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 12(1), 1-16.PDF icon DAP paper Medellin-Azuara et al. 2014 (3.37 MB)
Medellín-Azuara, J., Rosenstock T. S., Howitt R., Harter T., Jessoe K., Dzurella K. N., et al. (2013).  Agro-Economic Analysis of Nitrate Crop Source Reductions. Journal of Water Resources Management and Planning ASCE. 139(5), 11.
Marchetti, M. P., Moyle P. B., & Levine R. (2004).  Alien Fishes in California Watersheds: Characteristics of Successful and Failed Invaders. Ecological Applications. 14(2), 587-596.
Moyle, P. B., Crain P. K., Whitener K., & Mount JF. (2003).  Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.
Moyle, P. B. (2000).  Aliens in fresh water. Review of R. Claudi and J. H. Leach, eds. 2000. Non-indigenous freshwater organisms: vectors, biology, and impacts. . Ecology . 81, 2945-2946.
Stanley, S. E., Moyle P. B., & H. Shaffer B. (1995).  Allozyme Analysis of Delta Smelt, Hypomesus transpacificus and Longfin Smelt, Spirinchus thaleichthys in the Sacramento-San Joaquin Estuary, California. Copeia. 1995(2), 390-396.
Jr, J. J. Cech, & Moyle P. B. (1983).  ALTERNATIVE FISH SPECIES AS PREDATORS FOR RICE FIELD MOSQUITOS IN CALIFORNIA'. Bulletin of the Society of Vector Ecologists. 8(2), 107–110.
Moyle, P. B. (1984).  America's carp. Natural History. 93(9), 42-51.
Sturrock, A.M., Hunter E., Milton JA., & Trueman CN. (2012).  Analysis methods and reference concentrations of 12 minor and trace elements in fish blood plasma. Journal of Trace Elements in Medicine and Biology. 27, PDF icon Sturrock et al 2013 blood analyses JTEMB.pdf (491.03 KB)
Medellín-Azuara, J., Mendoza-Espinosa L., Lund J. R., & Ramirez-Acosta R. J. (2007).  The application of economic-engineering optimisation for water management in Ensenada, Baja California, Mexico. Water Science and Technology. 55(1-2), 339–347.
Schroeter, RE., O'Rear T., Young M., & Moyle P. B. (2015).  The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3), 
Moyle, P. B. (1977).  Are coarse fish a curse? . Fly Fisherman, Early Season . 8, 35-39.
R. Geary, E., & Moyle P. B. (1980).  Aspects of the Ecology of the Hitch, Lavinia exilicauda (Cyprinidae), a Persistent Native Cyprinid in Clear Lake, California. The Southwestern Naturalist. 25(3), 385-390.