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Journal Article
Gailey, R., Crowe A.S., & Gorelick S.M. (1991).  Coupled process parameter estimation and prediction uncertainty using hydraulic head and concentration data. Advances in Water Resources. 14(5), 301 - 314.
Courteney, WR., & Moyle P. B. (1992).  Crimes against biodiversity: the lasting legacy of fish introductions. Transactions of the 57th North American Wildlife and Natural Resource Conference. 57, 365-372.
Bennett, W. A. (2005).  Critical assessment of the delta smelt population in the San Francisco Estuary, California. San Francisco Estuary and Watershed Science. 3(2), 
Chen, W-H., Haunschild K., Lund J. R., & Fleenor W. E. (2010).  Current and Long-Term Effects of Delta Water Quality on Drinking Water Treatment Costs from Disinfection Byproduct Formation. San Francisco Estuary and Watershed Science. 8(3), 
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. PDF icon Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California (655.17 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. PDF icon Quinones et al 2014 dam removal.pdf (639.53 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2015).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. 25(1), 195-215.
Moyle, P. B. (1994).  The Decline of Anadromous Fishes in California. Conservation Biology. 8(3), 869-870.
Moyle, P. B., & Nichols R. D. (1974).  Decline of the Native Fish Fauna of the Sierra Nevada Foothills, Central California. American Midland Naturalist. 92(1), 72-83.
Mount, JF., & Twiss R. (2005).  Delta Levee Vulnerability Study. San Francisco Estuary and Watershed Science. 3(1), 
Moyle, P. B., Hobbs J., & Durand J. R. (2018).  Delta Smelt and the Politics of Water in California. Fisheries. 43,
Moyle, P. B., Brown L. R., Durand J. R., & Hobbs J. A. (2016).  Delta Smelt: Life History and Decline of a Once Abundant Species in the San Francisco Estuary. San Francisco Estuary and Watershed Science.
Moyle, P. B. (1982).  Desert fishes. Review of R. J. Naiman and D. L. Soltz (Editors), Fishes in North American Deserts. Environmental Biology of Fishes. 7, 395-397.
Gailey, R., & Gorelick S. M. (1993).  Design of Optimal, Reliable Plume Capture Schemes: Application to the Gloucester Landfill Ground-Water Contamination Problem. Ground Water. 31(1), 107–114.
Aparicio, E., Carmona-Catot G., Moyle P. B., & García-Berthou E. (2011).  Development and evaluation of a fish-based index to assess biological integrity of Mediterranean streams. Aquatic Conservation: Marine and Freshwater Ecosystems. 21(4), 324–337.
Feyrer, F., Herbold B., Matern S. A., & Moyle P. B. (2003).  Dietary shifts in a stressed fish assemblage: Consequences of a bivalve invasion in the San Francisco Estuary. Environmental Biology of Fishes. 67(3), 277-288.
O’Rear, T., & Moyle P. B. (2015).  Diets of two alien predators - adult striped bass and white catfish - in Suisun Marsh. PDF icon ORear CA NV AFS Presentation Striped Bass White Catfish Diets2015.pdf (2.89 MB)
Moyle, P. B., & Bacon J. (1969).  Distribution and abundance of molluscs in a freshwater environment. Journal of the Minnesota Academy of Science. 35, 82–85.
Kershner, JL., Snider WM., Turner DM., & Moyle P. B. (1992).  Distribution and sequencing of mesohabitats: are there differences at the reach scale?. Rivers. 3, 179–190.
Brown, L. R., & Moyle P. B. (1993).  Distribution, ecology, and status of the fishes of the San Joaquin River drainage, California. California Fish and Game. 79(3), 96–114.
Mount, JF., Fleenor W. E., Herbold B., & Kimmerer W. (2014).  The Draft Bay-Delta Conservation Plan: Assessment of Environmental Performance and Governance. West-Northwest Journal of Environmental Law & Policy.
Yarnell, S. M., Lind A. J., & Mount JF. (2012).  Dynamic flow modelling of riverine amphibian habitat with application to regulated flow management. River Research and Applications. 28, 177-191.
Moyle, P. B. (2003).  Eagle Lake rainbow trout: survivors in a troubled habitat. Streamkeepers Log . 104,
Li, H. W., & Moyle P. B. (1981).  Ecological Analysis of Species Introductions into Aquatic Systems. Transactions of the American Fisheries Society. 110(6), 772-782.
Milner, V., Yarnell S. M., & Peek R. A. (2019).  The ecological importance of unregulated tributaries to macroinvertebrate diversity and community composition in a regulated river. Hydrobiologia. 829, 291-305.
Wintzer, A. P., Meek M. H., Moyle P. B., & May B. (2010).  Ecological insights into the polyp stage of non-native hydrozoans in the San Francisco Estuary. Aquatic Ecology. 45(2), 151-161.
Moyle, P. B. (1973).  Ecological Segregation Among Three Species of Minnows (Cyprinidae) in a Minnesota Lake. Transactions of the American Fisheries Society. 102(4), 794-805.
Wikramanayake, E. D., & Moyle P. B. (1989).  Ecological structure of tropical fish assemblages in wet-zone streams of Sri Lanka. Journal of Zoology. 218(3), 503–526.
Yarnell, S. M., Viers J. H., & Mount JF. (2010).  Ecology and Management of the Spring Snowmelt Recession. Bioscience. 60(2), 
Moyle, P. B., & Nichols R. D. (1973).  Ecology of Some Native and Introduced Fishes of the Sierra Nevada Foothills in Central California. Copeia. 1973(3), 478-490.
Nelson, T., Chou H., Zikalala P., Lund J. R., Hui R., & Medellín-Azuara J. (2016).  Economic and Water Supply Effects of Ending Groundwater Overdraft in California's Central Valley. San Francisco Estuary and Watershed Science. 14(1), PDF icon Economic and Water Supply Effects of Ending Groundwater Overdraft in California's Central Valley (1.5 MB)
Harou, J. J., Medellín-Azuara J., Zhu T., Tanaka S., Lund J. R., Stine S., et al. (2010).  Economic consequences of optimized water management for a prolonged, severe drought in California. Water Resources Research. 46(W05522), PDF icon UC Davis Mega-drought study (531.61 KB)
Tanaka, S., Connell-Buck C., Madani K., Medellín-Azuara J., Lund J. R., & Hanak E. (2011).  Economic Costs and Adaptations for Alternative Regulations of California's Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 9(2), 
Mayzelle, M. M., Viers J. H., Medellín-Azuara J., & Harter T. (2014).  Economic Feasibility of Irrigated Agricultural Land Use Buffers to Reduce Groundwater Nitrate in Rural Drinking Water Sources. Water. 7(1), PDF icon Mayzelle_et_al_Water(2014).pdf (1.38 MB)
Medellín-Azuara, J., Howitt R., MacEwan D., & Lund J. R. (2012).  Economic Impacts of Climate-Related Changes to California Agriculture. Climatic Change. 109(S1), 
Howitt, R., MacEwan D., & Medellín-Azuara J. (2009).  Economic Impacts of Reductions in Delta Exports on Central Valley Agriculture. Agricultural and Resource Economics Update. 12(3), 1–4.
Li, H. W., Moyle P. B., & Garrett R. L. (1976).  Effect of the Introduction of the Mississippi Silverside (Menidia audens) on the Growth of Black Crappie (Pomoxis nigromaculatus) and White Crappie (P. annularis) in Clear Lake, California. Transactions of the American Fisheries Society. 105(3), 404-408.
Oxman, DS., Barnett-Johnson R., Smith M., Coffin SM., Miller D., Josephson R., et al. (2007).  The effect of vaterite deposition on sound reception, otolith morphology, and inner ear sensory epithelia in hatchery-reared Chinook salmon (Oncorhynchus tshawytscha). Canadian Journal of Fisheries and Aquatic Sciences. 64,
Marchetti, M. P., & Moyle P. B. (2001).  Effects of Flow Regime on Fish Assemblages in a Regulated California Stream. Ecological Applications. 11(2), 530-539.
Moyle, P. B. (1973).  Effects of Introduced Bullfrogs, Rana catesbeiana, on the Native Frogs of the San Joaquin Valley, California. Copeia. 1973(No. 1), 18-22.PDF icon SJ Frogs 1973.pdf (208.64 KB)
Moyle, P. B., & Holzhauser N. J. (1978).  Effects of the Introduction of Mississippi Silverside (Menidia audens) and Florida Largemouth Bass (Micropterus salmoides floridanus) on the Feeding Habits of Young-of-year Largemouth Bass in Clear Lake, California. Transactions of the American Fisheries Society. 107(4), 574-582.
Phillis, C.C., Sturrock A.M., Johnson RC., & Weber P.K. (2018).  Endangered winter-run Chinook salmon rely on diverse rearing habitats in a highly altered landscape.. Biological Conservation. 217, PDF icon Phillis_et_al_2017_Biological_Conservation.pdf (907.84 KB)
[Anonymous] (2016).  Environment shapes invertebrate assemblage structure differences between volcanic spring-fed and runoff rivers in northern California. Freshwater Science. 35(3), 
Lusardi, R. A., Bogan MT., Moyle P. B., & Dahlgren RA. (2016).  Environment shapes invertebrate assemblage structure differences between volcanic spring-fed and runoff rivers in northern California. Freshwater Science. 35(3), PDF icon Lusardietal2016.pdf (886.52 KB)
Adams, L., Lund J. R., Moyle P. B., Quiñones R. M., Herman J., & O'Rear T. (2017).  Environmental hedging: Theory and method for reconciling reservoir operations for downstream ecology and water supply. Water Resources Research.
Durand, J. R., Lusardi R. A., Nover D., Suddeth R., Carmona-Catot G., Connell-Buck C., et al. (2011).  Environmental heterogeneity and community structure of the Kobuk River, Alaska, in response to climate change. Ecosphere. 2(4),  1-19.
Jeffres, C., Opperman J.J., & Moyle P. B. (2008).  Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river. Environmental Biology of Fishes. 83(4), 
Tippets, W. E., & Moyle P. B. (1978).  Epibenthic Feeding by Rainbow Trout (Salmo gairdneri) in the McCloud River, California. Journal of Animal Ecology. 47(2), 549-559.
Medellín-Azuara, J., Harou J. J., & Howitt R. (2010).  Estimating economic value of agricultural water under changing conditions and the effects of spatial aggregation. Science of the Total Environment. 408,
Colombano, D., Manfree A. D., O'Rear T., Durand J. R., & Moyle P. B. (2020).  Estuarine-terrestrial habitat gradients enhance nursery function for resident and transient fishes in the San Francisco Estuary. Marine Ecology Progress Series. 637,