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Journal Article
Herbst, D. B., Bogan M. T., & Lusardi R. A. (2008).  Low specific conductivity limits growth and survival of the New Zealand mud snail from the Upper Owens River, California. Western North American Naturalist. 68(3),  324-333.
Bugg, RL., & Moyle P. B. (2006).  Making a precarious perch more secure: Central Valley farm ponds for native fish conservation. Sustainable Agriculture . 18(3), 
Johnson, RC., Weber PK., Wikert JD., Workman M., MacFarlane RB., Grove MJ., et al. (2012).  Managed metapopulations: Do salmon hatchery ‘sources’ lead to in-river ‘sinks’ in conservation?. PLos ONE. 7(2), PDF icon 2012_Johnson_plosone.pdf (418.82 KB)
Yarnell, S. M., Peek R. A., Epke G., & Lind A. J. (2016).  Management of the Spring Snowmelt Recession in Regulated Systems. JAWRA Journal of the American Water Resources Association. 52, 723-736.
Null, S. E. (2012).  Managing California’s Water: Insights from Interviews with Water Policy Experts. (Bartolomeo, E., Lund J. R., & Hanak E., Ed.).San Francisco Estuary and Watershed Science. 10(4), PDF icon Managing California's Water (329.9 KB)
Mount, JF., Gray B., Chappelle C., Gartrell G., Grantham T. E., Moyle P. B., et al. (2017).  Managing California's Freshwater Ecosystems: Lessons from the 2012-16 Drought.. Public Policy Institute of California.
Noss, R. F., Franklin J. F., Baker W. L., Schoennagel T., & Moyle P. B. (2006).  Managing Fire-Prone Forests in the Western United States. Frontiers in Ecology and the Environment. 4(9), pp. 481-487.
Herbold, B. (2018).  Managing for salmon resilience in California’s variable and changing climate. (Carlson, SM., Henery R., Johnson RC., Mantua N., Moyle P. B., & Sommer T., Ed.).San Francisco Estuary and Watershed Sciences. 16(2), PDF icon SFEWS_Herbold_0818_final.pdf (6.85 MB)
Fleckenstein, J., Anderson M., Fogg G., & Mount JF. (2004).  Managing Surface Water-Groundwater to Restore Fall Flows in the Cosumnes River. ASCE Journal of Water Resources Planning and Management. 130(4), 
Bunn, D. A., Moyle P. B., & Johnson C. K. (2014).  Maximizing the ecological contribution of conservation banks. Wildlife Society Bulletin. 38(2), 377–385.
Grantham, T. E., Perrée I., Cañedo-Argüelles M., Rieradevall M., & Prat N. (2012).  A mesocosm approach for detecting stream invertebrate community responses to treated wastewater effluent. Environmental Pollution. 160, 95-102.
Feyrer, FV., Hobbs J., Acuna S., Mahardja B., Grimaldo L., Baerwald B., et al. (2015).  Metapopulation structure of a semi-anadromous fish in a dynamic environment. Canadian Journal of Fisheries and Aquatic Sciences. 72(5), 
Brogan, S. D., & Gailey R. (1995).  A Method for Estimating Field-Scale Mass Transfer Rate Parameters and Assessing Aquifer Cleanup Times. Ground Water. 33(6), 997–1009.
Null, S. E., Ligare S. T., & Viers J. H. (2013).  A Method to Consider Whether Dams Mitigate Climate Change Effects on Stream Temperatures. Journal of the American Water Resources Association. PDF icon Viers_JAWRA_2011.pdf (94.01 KB)
Moyle, P. B., & Baltz D. M. (1985).  Microhabitat Use by an Assemblage of California Stream Fishes: Developing Criteria for Instream Flow Determinations. Transactions of the American Fisheries Society. 114(5), 695-704.
Moyle, P. B., Fisher FW., & Li HW. (1974).  Mississippi Silversides and Logperch In Sacramento San-Joaquin River System. California Fish and Game . 60, 144-149.
Pinter, N., Huthoff F., Dierauer J., Remo W.F., & Damptz A. (2016).  Modeling residual flood risk behind levees, Upper Mississippi River, USA. Environmental Science & Policy. 58(131-140), PDF icon PinterEtAl2016.pdf (517.19 KB)
Young, C., Escobar M., Fernandes M., Joyce B., Kiparsky M., Mount JF., et al. (2009).  Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6), 
Liu, J-X., Taternkov A., O'Rear T., Moyle P. B., & Avise J. (2013).  Molecular evidence for multiple paternity in a population of the viviparous tule perch, Hysterocarpus traski. Journal of Heredity. 104(2), 
Liu, J-X., Tatarenkov A., O’Rear T. A., Moyle P. B., & Avise J. C. (2012).  Molecular Evidence for Multiple Paternity in a Population of the Viviparous Tule Perch Hysterocarpus traski. Journal of Heredity. 104(2), 217-222.
Purdy, S. E., Moyle P. B., & Tate K. W. (2012).  Montane meadows in the Sierra Nevada: comparing terrestrial and aquatic assessment methods. Environmental Monitoring and Assessment. 184(11), 6967-6986.
Madani, K., & Lund J. R. (2011).  A Monte-Carlo game theoretic approach for Multi-Criteria Decision Making under uncertainty. Advances in Water Resources. 34, 607 - 616.
Moyle, P. B. (1977).  More on Nile perch. SFI Bulletin . 281, 7.
Baltz, D. M., & Moyle P. B. (1981).  Morphometric Analysis of Tule Perch (Hysterocarpus traski) Populations in Three Isolated Drainages. Copeia. 1981(2), 305-311.
Jeffres, C. A., A Klimley P., Merz J. E., & Cech J. J. (2006).  Movement of Sacramento sucker, Catostomus occidentalis, and hitch, Lavinia exilicauda, during a spring release of water from Camanche Dam in the Mokelumne River, California. Environmental Biology of Fishes. 75, 365–373.
Prine, J.E., Lawley G.E., & Moyle P. B. (1975).  A multidisciplinary approach to vector ecology at Clear Lake, California. Bulletin of the Society of Vector Ecologists . 2, 21-31.
Viers, J. H., Fremier A. K., Hutchinson R. A., Quinn J. F., Thorne J. H., & Vaghti M. G. (2011).  Multiscale Patterns of Riparian Plant Diversity and Implications for Restoration. Restoration Ecology. 19,
Matern, S. A., Moyle P. B., & Pierce L. C. (2002).  Native and Alien Fishes in a California Estuarine Marsh: Twenty-One Years of Changing Assemblages. Transactions of the American Fisheries Society. 131(5), 797-816.
Brown, K., & Pasternack G. (2005).  Natural and anthropogenic geochemical signatures of floodplain and deltaic sedimentary strata, Sacramento Delta, CA. Environmental Pollution. 141(2), 
Ribeiro, F., Collares-Pereira M. J., & Moyle P. B. (2009).  Non-native fish in the fresh waters of Portugal, Azores and Madeira Islands: a growing threat to aquatic biodiversity. Fisheries Management and Ecology. 16(4), 255–264.
Nichols, A. L., & Viers J. H. (2017).  Not all breaks are equal: Variable hydrologic and geomorphic responses to intentional levee breaches along the lower Cosumnes River, California. River Research and Applications. PDF icon rra3159.pdf (6.52 MB)
Walden, G. K., Darin G. M. S., Grewell B., Kratville D., Mauldin J., O'Brien J., et al. (2019).  Noteworthy collections, California (Alternanthera philoxeroides). Madrono. 66(1), 
Moyle, P. B. (2013).  Novel Aquatic Ecosystems: The New Reality For Streams In California And Other Mediterranean Climate Regions. River Research and Applications. PDF icon Novel aquatic ecosystems (2.62 MB)
Jeffres, C. A., & Adams C. (2019).  Novel life history tactic observed in fall-run Chinook Salmon. Ecology. 100(10), 
Moyle, P. B., & Li H.W. (1994).  Nuisance essay: good report but should go much farther. Fisheries. 19, 22-23.
Moyle, P. B. (1970).  Occurrence of king (chinook) salmon in the Kings River, Fresno County. California Fish and Game . 56, 314-315.
Hui, R., Lund J. R., Zhao J., & Zhao T. (2016).  Optimal Flood Pre-releases—Flood Hedging for A Single Reservoir. Water Resources Management. 30(5113), PDF icon Optimal Pre-storm Flood Hedging Releases for a Single Reservoir.pdf (8.71 MB)
Waller-Barrera, C., Mendoza-Espinosa L., Medellín-Azuara J., & Lund J. R. (2009).  Optimización económico-ingenieril del suministro agrícola y urbano: una aplicación de reúso del agua en Ensenada, Baja California, México. Ingeniería hidráulica en México. 24(4), 87–103.
Null, S. E., Medellín-Azuara J., Escriva-Bou A., Lent M., & Lund J. R. (2014).  Optimizing the dammed: Water supply losses and fish habitat gains from dam removal in California. Journal of Environmental Management. 136, 121-131.PDF icon Journal of Environmental Management: Optimizing the dammed (2.09 MB)
Moyle, P. B., Daniels R. A., Herbold B., & Baltz D. M. (1986).  Patterns in distribution and abundance of a noncoevolved assemblage of estuarine fishes in California. Fishery Bulletin. 84, 105-117.
Moyle, P. B., Crain P. K., & Whitener K. (2007).  Patterns In The Use Of A Restored California Floodplain By Native And Alien Fishes. San Francisco Estuary and Watershed Science. 5(3), 
Howard, J., Klausmeyer K., Furnish J., Gardali T., Grantham T. E., Katz J., et al. (2015).  Patterns of Freshwater Species Richness, Endemism, and Vulnerability in California. PLoS ONE. 10(7), PDF icon Read full study (3.16 MB)
Moyle, P. B., & Vondracek B. (1985).  Persistence and Structure of the Fish Assemblage in a Small California Stream. Ecology. 66(1), 1-13.
Durand, J. R., Fleenor W. E., McElreath R., Santos M., & Moyle P. B. (2016).  Physical controls on the distribution of the submersed aquatic weed Egeria densa in the Sacramento-San Joaquin Delta and implcations for habitat.. San Francisco Estuary and Watershed Science. 14(1), 
Sturrock, A.M., Trueman CN., Milton JA., Waring CP., Cooper MJ., & Hunter E. (2014).  Physiological influences can outweigh environmental signals in otolith microchemistry research. Marine Ecology Progress Series. 500, PDF icon Sturrock et al 2014 Physiological influences can outweigh environmental signals m500p245.pdf (966.77 KB)
Skiles, T. D., Yoshiyama R. M., & Moyle P. B. (2013).  Pink salmon (Oncorhynchus gorbuscha) in the Salinas River, California: a new record and historical perspectives. California Fish and Game. 99(1), 55-59.
Suddeth, R. (2011).  Policy Implications of Permanently Flooded Islands in the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 9(2), 
Moyle, P. B. (1964).  Populations of peritrichs on the pond snail, Physa gyrina Say. Journal of the Minnesota Academy of Science . 31, 125-130.
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential factors affecting survival differ by run-timing and location: linear mixed-effects models of Pacific salmonids (Oncorhynchus spp.) in the Klamath River, California. PDF icon Quinones et al 2014 survival linear mixed-effects models.pdf (689.29 KB)
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California. PLOS One. 9(5), PDF icon journal.pone_.0098392.pdf (702.76 KB)