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Young, C., Escobar M., Fernandes M., Joyce B., Kiparsky M., Mount JF., et al. (2009).  Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6), 
Young, M., Perales M., Durand J. R., & Moyle P. B. (2016).  Fish distribution in the cache slough complex of the Sacramento-San Joaquin Delta during a drought. IEP Newsletter.
Young, M., Berridge K., O'Rear T., Moyle P. B., & Durand J. R. (2017).  Habitat partitioning by native and non-native fishes and decapods in novel habitats of the upper San Francisco Estuary. Biological Invasions.
Young, M., Howe E., O'Rear T., Berridge K., & Moyle P. (2020).  Food Web Fuel Differs Across Habitats and Seasons of a Tidal Freshwater Estuary. Estuaries and Coasts. 188,
Yoshiyama, R. M., Fisher F. W., & Moyle P. B. (1998).  Historical Abundance and Decline of Chinook Salmon in the Central Valley Region of California. North American Journal of Fisheries Management. 18(3), 487-521.
Yoshiyama, R. M., Gerstung E. R., Fisher F. W., & Moyle P. B. (2001).  Historical and present distribution of Chinook salmon in the Central Valley drainage of California. (Brown, R. L., Ed.).Contributions to the Biology of Central Valley Salmonids. 71-176.
Yoshiyama, R. M., Moyle P. B., Gerstung E. R., & Fisher F. W. (2000).  Chinook Salmon in the California Central Valley: An Assessment. Fisheries. 25(2), 6-20.
Yoshiyama, R. M., Gerstung E. R., Fisher F. W., & Moyle P. B. (1996).  Historical and present distribution of Chinook salmon in the Central Valley drainage of California. Sierra Nevada Ecosystem Project: Final report to Congress , Vol. III, assessments, commissioned reports, and background information. 3, 309-362.
Yoshiyama, R. M., & Moyle P. B. (2010).  Historical Review of Eel River Anadromous Salmonids, with Emphasis on Chinook Salmon, Coho Salmon and Steelhead. PDF icon Eel River Final Report, Feb. 2010 (1.34 MB)
Yarnell, S. M., Peek R. A., Keung N., Todd B. D., Lawler S., & Brown C. (2019).  A lentic breeder in lotic waters: Sierra Nevada Yellow-Legged Frog (Rana sierrae) habitat suitability in northern Sierra Nevada streams. Copeia.
Yarnell, S. M. (2008).  Quantifying physical habitat heterogeneity in an ecologically meaningful manner: A case study of the habitat preferences of the Foothill yellow-legged frog (Rana boylii). Landscape Ecology Research Trends.
Yarnell, S. M., Peek R. A., Rheinheimer D. E., Lind A. J., & Viers J. H. (2013).  Management of the Spring Snowmelt Recession. 137.PDF icon CEC_Recsn_Limb_Draft_Final_Report.pdf (8 MB)PDF icon Management of the Spring Snowmelt Recession in Regulated Systems (AGU 2013 presentation) (1.87 MB)
Yarnell, S. M., Lind A. J., & Mount JF. (2012).  Dynamic flow modelling of riverine amphibian habitat with application to regulated flow management. River Research and Applications. 28, 177-191.
Yarnell, S. M. (2013).  Stream Habitat Associations of the Foothill Yellow-Legged Frog (Rana boylii): The Importance of Habitat Heterogeneity. Ecohydraulics: An Integrated Approach. 193-212.PDF icon Chapter 11 in Ecohydraulics: An Integrated Approach (3.99 MB)
Yarnell, S. M., Petts G., Schmidt J., Whipple A., Beller E., Dahm C., et al. (2015).  Functional Flows in Modified Riverscapes: Hydrographs, Habitats and Opportunities. BioScience. 65(9), PDF icon BioScience-2015-Yarnell-biosci_biv102.pdf (327.28 KB)
Yarnell, S. M., Bondi C., Lind A. J., & Peek R. A. (2011).  Habitat Models for the Foothill yellow-legged frog (Rana boylii) in the Sierra Nevada of California. 139.PDF icon Yarnell et al FYLF modeling final report CWS.pdf (3.69 MB)
Yarnell, S. M., Peek R. A., Epke G., & Lind A. J. (2016).  Management of the Spring Snowmelt Recession in Regulated Systems. JAWRA Journal of the American Water Resources Association. 52, 723-736.
Yarnell, S. M., Yager E., Kenworthy M., Merrit D., & Lind A. J. (2012).  Impacts of Flow Recession Dynamics on Channel Bar Morphology. 30.
Yarnell, S. M., Mount JF., & Larsen E. W. (2006).  The influence of relative sediment supply on riverine habitat heterogeneity. Geomorphology. 80, 310-324.
Yarnell, S. M., Viers J. H., & Mount JF. (2010).  Ecology and Management of the Spring Snowmelt Recession. Bioscience. 60(2), 
W
Woodson, LE., Well BK., Weber PK., MacFarlane RB., Whitman GE., & Johnson RC. (2013).  Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytcha.. Marine Ecology Progress Series. 487,
Wintzer, A. P., Meek M. H., & Moyle P. B. (2013).  Abundance, size, and diel feeding ecology of Blackfordia virginica (Mayer, 1910), a non-native hydrozoan in the lower Napa and Petaluma Rivers, California (USA). Aquatic Invasions. 8(2), 147–156.
Wintzer, A. P., Meek M. H., & Moyle P. B. (2011).  Trophic ecology of two non-native hydrozoan medusae in the upper San Francisco Estuary. Marine and Freshwater Research. 62, 952–961.
Wintzer, A. P., Meek M. H., Moyle P. B., & May B. (2010).  Ecological insights into the polyp stage of non-native hydrozoans in the San Francisco Estuary. Aquatic Ecology. 45(2), 151-161.
Wintzer, A. P., Meek M. H., & Moyle P. B. (2011).  Life history and population dynamics of Moerisia sp., a non-native hydrozoan, in the upper San Francisco Estuary (U.S.A.). Estuarine, Coastal and Shelf Science. 94(1), 48 - 55.
Windell, S., Brandes PL., Conrad JL., Ferguson JW., Goertler PAL., Harvey BN., et al. (2017).  Scientific framework for assessing factors influencing endangered Sacramento River winter-run Chinook (Oncorhynchus tshawytscha) across the life cycle. NOAA Technical Memorandum . NMFS-SWFSC-586, PDF icon NOAA-TM-NMFS-SWFSC-586_Final.pdf (1.62 MB)
Willmes, M., Hobbs J. A., Sturrock A.M., Bess Z., Lewis L.S., Glessner JG., et al. (2018).  Fishery collapse, recovery, and the cryptic decline of wild salmon on a major California River. Canadian Journal of Fisheries and Aquatic Sciences. PDF icon cjfas-2017-0273.pdf (7.7 MB)
Willis, A., & Deas M. (2012).  Response to Restoration: Water Temperature Conditions in Big Springs Creek and Surrounding Waterways, 2009-2011. PDF icon SBSR Response to Restoration: 2009-2011 (2.39 MB)
Willis, A., Nichols A. L., Holmes E., Jeffres C., Fowler A. C., Babcock C. A., et al. (2017).  Seasonal aquatic macrophytes reduce water temperatures via a riverine canopy in a spring-fed stream. Freshwater Science. PDF icon Willis et al. 2017 Riverine canopy.pdf (1.16 MB)
Willis, A., Deas M., Jeffres C., Mount JF., Moyle P. B., & Nichols A. (2011).  Executive Analysis of Restoration Actions in Big Springs Creek March 2008-September 2011. PDF icon Read full study (4.34 MB)
Willis, A. (2018).  South Fork Scott River: Preliminary Assessment of Bouvier Ranch for Coho Recovery. PDF icon Preliminary Assessment of Bouvier Ranch for Coho Recovery_FINAL_8-1-2018.pdf (1.43 MB)
Willis, A. D., & Holmes E. (2019).  Eye in the Sky: Using UAV Imagery of Seasonal Riverine Canopy Growth to Model Water Temperature. Hydrology. 6(1), 
Willis, A., Nichols A., Jeffres C., & Deas M. (2013).  Water Resources Management Planning: Conceptual Framework and Case Study of the Shasta Basin. PDF icon Water Resources Management Planning: Conceptual Framework and Case Study of the Shasta Basin (3.34 MB)
Willis, A., Campbell A. M., Fowler A. C., Babcock C. A., Howard J. K., Deas M., et al. (2015).  Instream flows: new tools to quantify water quality conditions for returning adult Chinook salmon. Journal of Water Resources Planning and Management. PDF icon Instream flows: new tools to quantify water quality conditions for returning adult Chinook salmon (15.54 MB)
Willis, A., Lund J. R., Townsley E., & Faber B. (2011).  Climate Change and Flood Operations in the Sacramento Basin, California. San Francisco Estuary and Watershed Science. 9(2), 
Williamson, B. O., O'Rear T., De Carion D., Durand J. R., & Moyle P. B. (2015).  Fishes of the Nurse-Denverton Complex: managed wetlands and tidal waterways in Suisun Marsh. IEP Newsletter.
Williams, P. B., Andrews E., Opperman J.J., Bozkurt S., & Moyle P. B. (2009).  Quantifying activated floodplains on a lowland regulated river: its application to floodplain restoration in the Sacramento Valley. San Francisco Estuary and Watershed Science. 7(1), 
Williams, TH. (2013).  Findings of Upper Klamath Trinity River Chinook salmon Biological Review Team. PDF icon UKTR Chinook Biological Review Team (1.19 MB)
Wikramanayake, E. D., & Moyle P. B. (1989).  Ecological structure of tropical fish assemblages in wet-zone streams of Sri Lanka. Journal of Zoology. 218(3), 503–526.
Whipple, A., Viers J. H., & Dahlke H. (2017).  Flood regime typology for floodplain ecosystem management as applied to the unregulated Cosumnes River of California, United States. Ecohydrology. 10(e1817), 
Whipple, A. (2018).  Managing flow regimes and landscapes together: Hydrospatial analysis for evaluating spatiotemporal floodplain inundation patterns with restoration and climate change implications. Hydrologic Sciences. Doctor of Philosophy, 255.PDF icon Whipple_Dissertation_2018.pdf (10.15 MB)
Waller-Barrera, C., Mendoza-Espinosa L., Medellín-Azuara J., & Lund J. R. (2009).  Optimización económico-ingenieril del suministro agrícola y urbano: una aplicación de reúso del agua en Ensenada, Baja California, México. Ingeniería hidráulica en México. 24(4), 87–103.
Waller-Barrera, C., Mendoza-Espinosa L., Medellín-Azuara J., & Lund J. R. (2008).  Water management optimization for urban and agricultural use in semiarid Mexico. 1st IWA Mexico National Young Water Professionals Conference.
Walden, G. K., Darin G. M. S., Grewell B., Kratville D., Mauldin J., O'Brien J., et al. (2019).  Noteworthy collections, California (Alternanthera philoxeroides). Madrono. 66(1),