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A
Wintzer, A. P., Meek M. H., & Moyle P. B. (2013).  Abundance, size, and diel feeding ecology of Blackfordia virginica (Mayer, 1910), a non-native hydrozoan in the lower Napa and Petaluma Rivers, California (USA). Aquatic Invasions. 8(2), 147–156.
Chornesky, E. A., Ackerly D. D., Beier P., Davis F. W., Flint L. E., Lawler J. J., et al. (2015).  Adapting California's Ecosystems to a Changing Climate. BioScience. 65(3), 247–262.
Lund, J. R., & Moyle P. B. (2013).  Adaptive Management and Science for the Delta Ecosystem. San Francisco Estuary and Watershed Science. 11(3), 
Schroeter, RE., & Moyle P. B. (2005).  Alien fishes in California’s marine environments. (Allen, L. G., & Horn M. H., Ed.).Ecology of California marine fishes. . 611–620.
Marchetti, M. P., Moyle P. B., & Levine R. (2004).  Alien Fishes in California Watersheds: Characteristics of Successful and Failed Invaders. Ecological Applications. 14(2), 587-596.
Moyle, P. B., Crain P. K., Whitener K., & Mount JF. (2003).  Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.
Moyle, P. B. (2000).  Aliens in fresh water. Review of R. Claudi and J. H. Leach, eds. 2000. Non-indigenous freshwater organisms: vectors, biology, and impacts. . Ecology . 81, 2945-2946.
Stanley, S. E., Moyle P. B., & H. Shaffer B. (1995).  Allozyme Analysis of Delta Smelt, Hypomesus transpacificus and Longfin Smelt, Spirinchus thaleichthys in the Sacramento-San Joaquin Estuary, California. Copeia. 1995(2), 390-396.
Jr, J. J. Cech, & Moyle P. B. (1983).  ALTERNATIVE FISH SPECIES AS PREDATORS FOR RICE FIELD MOSQUITOS IN CALIFORNIA'. Bulletin of the Society of Vector Ecologists. 8(2), 107–110.
Moyle, P. B. (1984).  America's carp. Natural History. 93(9), 42-51.
Moyle, P. B., & Marchetti M. P. (1999).  Applications of indices of biotic integrity to California streams and watersheds. (Simon, T.. P., & Hughes R.., Ed.).Assessing the sustainability and biological integrity of water resources using fish communities. 367–380.
Mount, JF., Bennett W. A., Durand J. R., Fleenor W. E., Hanak E., Lund J. R., et al. (2012).  Aquatic Ecosystem Stressors in the Sacramento–San Joaquin Delta. 22.
Kimmerer, W., Brown L. R., Culberson S.., Moyle P. B., Nobriga M., & Thompson J. (2008).  Aquatic ecosystems. (Healey, M., Dettinger M.., & Norgaard R.., Ed.).The State of Bay-Delta Science 2008. 55-72.
Schroeter, RE., O'Rear T., Young M., & Moyle P. B. (2015).  The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3), 
Moyle, P. B. (1977).  Are coarse fish a curse? . Fly Fisherman, Early Season . 8, 35-39.
R. Geary, E., & Moyle P. B. (1980).  Aspects of the Ecology of the Hitch, Lavinia exilicauda (Cyprinidae), a Persistent Native Cyprinid in Clear Lake, California. The Southwestern Naturalist. 25(3), 385-390.
Broadway, J. E., & Moyle P. B. (1978).  Aspects of the ecology of the prickly sculpin,Cottus asper Richardson, a persistent native species in Clear Lake, Lake County, California. Environmental Biology of Fishes. 3(4), 337-343.
Light, T.., Moyle P. B., & J Clode C. (2015).  Assembly rules and novel assemblages in aquatic ecosystems. Biological Invasions in Changing Ecosystems Vectors, Ecological Impacts, Management and Predictions.
Baumsteiger, J., & Moyle P. B. (2017).  Assessing Extinction. Bioscience. 67,
Grantham, T. E., & Moyle P. B. (2014).  Assessing flows for fish below dams: A systematic approach to evaluate compliance with California Fish and Game Code 5937. Center for Watershed Sciences Technical Reports. 1-136.PDF icon Download complete report (5.64 MB)
Jeffres, C., Nichols A., Willis A., Mount JF., Moyle P. B., & Deas M. (2010).  Assessment of Restoration Actions on Big Springs Creek, Shasta River, California 2009-2010.
B
Moyle, P. B. (1991).  Ballast water introductions. Fisheries. 16, 4–6.
Jeffres, C., Dahlgren R. A., Kiernan J. D., King A. M., Lusardi R. A., Nichols A., et al. (2009).  Baseline Assessment of Physical and Biological Conditions Within Waterways on Big Springs Ranch, Siskiyou County, California. PDF icon Read full study (9.11 MB)
Jeffres, C., Mount JF., Moyle P. B., Deas M., Buckland E., Hammock B., et al. (2007).  Baseline Assessment of Salmonid Habitat and Aquatic Ecology of the Nelson Ranch, Shasta River, California Water Year 2007. PDF icon Read full report (1.9 MB)
Trenham, P. C., H. Shaffer B., & Moyle P. B. (1998).  Biochemical Identification and Assessment of Population Subdivision in Morphologically Similar Native and Invading Smelt Species (Hypomesus) in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society. 127(3), 417-424.
Moyle, P. B. (1994).  Biodiversity, biomonitoring, and the structure of stream fish communities. (Loeb, S.., & Spacie A.., Ed.).Biological monitoring of aquatic systems. 171–186.
Jr, WR. Courtenay, & Moyle P. B. (1996).  Biodiversity, fishes, and the introduction paradigm. (Szaro, R.. C., & Johnston D.. W., Ed.).Biodiversity in Managed Landscapes. 239–252.
Moyle, P. B., & Williams J. E. (1990).  Biodiversity Loss in the Temperate Zone: Decline of the Native Fish Fauna of California. Conservation Biology. 4(3), pp. 275-284.
Moyle, P. B., & Light T.. (1996).  Biological invasions of fresh water: Empirical rules and assembly theory. Biological Conservation. 78(1-2), 149 - 161.
Lodge, D. M., Williams S., Isaac H. J. Mac, Hayes K. R., Leung B., Reichard S., et al. (2006).  Biological Invasions: Recommendations for U.S. Policy and Management. Ecological Applications. 16(6), 2035-2054.
Moyle, P. B., Baxter R. D., Sommer T., Foin T. C., & Matern S. A. (2004).  Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science. 2(2), 1-47.
Daniels, R. A., & Moyle P. B. (1978).  Biology, Distribution and Status of Cottus asperrimus in the Pit River Drainage, Northeastern California. Copeia. 1978(4), 673-679.
Crain, P. K., & Moyle P. B. (2011).  Biology, History, Status, and Conservation of Sacramento Perch, Archoplites interruptus: A Review . San Francisco Estuary and Watershed Science. 9(1), 
Brown, L. R., Chase S., Mesa M., Beamish R., & Moyle P. B. (2010).  Biology, management, and conservation of lampreys in North America. American Fisheries Society Symposium . 72, 321.
Sturgess, J. A., & Moyle P. B. (1978).  Biology of rainbow trout (Salmo gairdneri), brown trout (S. trutta), and interior Dolly Varden (Salvelinus confluentus) in the McCloud River, California, in relation to management. Cal-Neva Wildlife . 1978, 239-250.
Moyle, P. B., & Marciochi A. (1975).  Biology of the Modoc Sucker, Catostomus microps, in Northeastern California. Copeia. 1975(3), 556-560.
Power, M. E., R. Stout J., Cushing C. E., Harper P. P., F. Hauer R., Matthews W. J., et al. (1988).  Biotic and Abiotic Controls in River and Stream Communities. Journal of the North American Benthological Society. 7(4), 456-479.
Moyle, P. B., & Randall P. J. (1996).  Biotic integrity of watersheds. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 975-985.
Carmona-Catot, G., Moyle P. B., Aparicio E., Crain P. K., Thompson L. C., & García-Berthou E. (2010).  Brook Trout Removal as a Conservation Tool to Restore Eagle Lake Rainbow Trout. North American Journal of Fisheries Management. 30(5), 1315-1323.
C
Durand, J. R., De Carion D., Young M., Montgomery J., Perales M., Berridge K., et al. (2013).  Cache Slough and the Northern Arc of Native Fishes.
Viers, S.. D., Opler P.. A., Gilmer D.. S., Graber D.. M., Graham T.., Huckaby L.. S., et al. (1998).  California. (Mac, M.. J., Opler P.. A., Haecker C.. E. Puckett, & Doran P.. D., Ed.).Status and trends of the nation’s biological resources. 1 & 2, 593-603.
Quiñones, R. M., & Moyle P. B. (2015).  California’s freshwater fishes: status and management. FISHMED Fishes in Mediterranean Environments. 20p.PDF icon Complete study (1.46 MB)
Moyle, P. B. (1975).  California Trout Streams: the way they were, probably. (Moyle, P. B., & Koch D.L.., Ed.).Symposium on trout-non-game relationships in streams. 17, 9-19.
Moyle, P. B. (1975).  California Trout Streams: the way they were, probably. (Moyle, P. B., & Koch D.L.., Ed.).Symposium on trout-non-game relationships in streams. 17, 9-19.
Hanak, E., Lund J. R., Dinar A., Gray B. E., Howitt R., Mount JF., et al. (2009).  California Water Myths.
Sommer, T., Harrell B., Nobriga M., Brown R. L., Moyle P. B., Kimmerer W., et al. (2001).  California's Yolo Bypass: Evidence that flood control Can Be compatible with fisheries, wetlands, wildlife, and agriculture. Fisheries. 26(8), 6-16.
Marchetti, M. P., & Moyle P. B. (1995).  The case of Putah Creek: Conflicting values complicate stream protection. California Agriculture. 49(6), 73-78.PDF icon Putah Creek CA Agriculture.pdf (1.1 MB)
Marchetti, M. P., & Moyle P. B. (1995).  The case of Putah Creek: Conflicting values complicate stream protection. California Agriculture. 49(6), 73–78.
Meng, L., Moyle P. B., & Herbold B. (1994).  Changes in Abundance and Distribution of Native and Introduced Fishes of Suisun Marsh. Transactions of the American Fisheries Society. 123(4), 498-507.
Eagles-Smith, C. A., Suchanek T. H., Colwell A. E., Anderson N. L., & Moyle P. B. (2008).  Changes in fish diets and mercury accumulation in Clear Lake, California: effects of an invasive planktivorous fish. Ecological Applications. 18(8 Supplement), A213-A226.