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Moyle, P. B., Quiñones R. M., & Kiernan J. D. (2012).  Effects of Climate Change on the Inland Fishes of California: With Emphasis on the San Francisco Estuary Region. Our Changing Climate.
Moyle, P. B. (1985).  Exotic fishes and vacant niches: Review of W. R. Courtenay, Jr. and J. R. Stauffer, Jr. (Editors), Distribution, Biology, and Management of Exotic Fishes. The Johns Hopkins University Press, Baltimore, Maryland. Environmental Biology of Fishes . 13, 315-317.
Moyle, P. B., & Holzhauser N. J. (1978).  Effects of the Introduction of Mississippi Silverside (Menidia audens) and Florida Largemouth Bass (Micropterus salmoides floridanus) on the Feeding Habits of Young-of-year Largemouth Bass in Clear Lake, California. Transactions of the American Fisheries Society. 107(4), 574-582.
Moyle, P. B. (1991).  Ecology of introduced fishes and aquatic invertebrates in North America. (Yount, J. D., Ed.). 1-3.
Moyle, P. B. (1999).  Effects of invading species on freshwater and estuarine ecosystems. Invasive species and biodiversity management. 177-191.
Moyle, P. B. (2003).  Eagle Lake rainbow trout: survivors in a troubled habitat. Streamkeepers Log . 104,
Moyle, P. B., & Randall P. J. (1998).  Evaluating the Biotic Integrity of Watersheds in the Sierra Nevada, California. Conservation Biology. 12(6), 1318–1326.
Moyle, P. B., & Nichols R. D. (1973).  Ecology of Some Native and Introduced Fishes of the Sierra Nevada Foothills in Central California. Copeia. 1973(3), 478-490.
Moyle, P. B. (1973).  Effects of Introduced Bullfrogs, Rana catesbeiana, on the Native Frogs of the San Joaquin Valley, California. Copeia. 1973(No. 1), 18-22.PDF icon SJ Frogs 1973.pdf (208.64 KB)
Moyle, P. B. (1973).  Ecological Segregation Among Three Species of Minnows (Cyprinidae) in a Minnesota Lake. Transactions of the American Fisheries Society. 102(4), 794-805.