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Status of the Modoc sucker (Catostomus microps, Pisces: Catostomidae). Cal-Neva Wildlife. 1974, 35–38.(1974).
Some effects of impoundments on populations of stream fish. (Moyle, P. B., & Koch D.L., Ed.).Symposium on Trout/Nongame Fish Relationships in Streams. 17, 31-40.(1975).
Some effects of channelization on the fishes and invertebrates of Rush Creek, Modoc County, California. California Fish and Game. 62, 179–186.(1976).
Stillwaters west. Rod and Reel Magazine . Part I, September/October; Part II, November/December, Part I pp20-26; Part II pp22-27.(1979).
Sixteen species accounts of California endemic fishes. (Lee, D.S., Ed.).Atlas of North American Freshwater Fishes. 123, 164, 199, 200, 209, 345, 346, 347, 384, 385, 391, 582, 777, 803, 815, 819.(1980).
Stochasticity in Structural and Functional Characteristics of an Indiana Stream Fish Assemblage: A Test of Community Theory. The American Naturalist. 120(4), 423-454.(1982).
Segregation by species and size classes of rainbow trout, Salmo gairdneri, and Sacramento sucker, Catostomus occidentalis, in three California streams. Environmental Biology of Fishes. 10(1-2), 101-110.(1984).
Stochasticity and Assemblage Organization in an Indiana Stream Fish Assemblage. The American Naturalist. 126(2), 275-285.(1985).
Spatial, seasonal and diel distribution of fishes in a California reservoir dominated by native fishes. Fisheries Research. 7(1-2), 31 - 53.(1989).
Seasonal Changes in Microhabitat Selection by Rainbow Trout in a Small Stream. Transactions of the American Fisheries Society. 120(2), 166-176.(1991).
Saving California's salmon: The legacy of Ishi. Trout. Summer, 14-17.(1993).
Status of coho salmon (Oncorhynchus kisutch) in California. North American Journal of Fisheries Management . 14, 237-261.(1994).
Status of Splittail in the Sacramento-San Joaquin Estuary. Transactions of the American Fisheries Society. 124(4), 538-549.(1995).
Status of aquatic habitat types. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 945-952.(1996).
Status of fish and fisheries. Sierra Nevada ecosystem project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 953-973.(1996).
Spatial and Temporal Ecology of Native and Introduced Fish Larvae in Lower Putah Creek, California. Environmental Biology of Fishes. 58(1), 75-87.(2000).
Simulated changes in shallow groundwater and vegetation distributions under different reservoir operations scenarios.. Ecological Applications. 14, 192-207.(2004).
Subsidence, sea level rise, and seismicity in the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 3(1),(2005).
Systems Analysis for Restoring the Colorado River Delta in Mexico. Graduate Student Symposium.(2005).
Systems Analysis for Restoring the Lower Colorado River Delta. 2005 International Law Conference: Freshwater Ecosystem Restoration: The Role of Law Process and Lawyers.(2005).
Salmon, Wildlife, and Wine: Marine-Derived Nutrients in Human-Dominated Ecosystems of Central California. Ecological Applications. 16(3), 999-1009.(2006).
Systems analysis for restoring the Lower Colorado River Delta. Pacific McGeorge Global Business and Development Law Journal. 19(1), 99–114.(2006).
Spatial scales of mixing and natal source contributions of salmon populations in the coastal ocean detected by otolith and genetic signatures of origin. Department of Ecology and Evolutionary Biology, University of California, Santa Cruz. PhD,(2007).
Sensitivity analysis of key components in large-scale hydroeconomic models. Fall Conference American Geophysical Union.(2008).
Serpentine haiku. California Coast and Ocean. 24(2), 40.(2008).
Simulated Effects of Stream Restoration on the Distribution of Wet-Meadow Vegetation. Restoration Ecology. 18, 882–893.(2010).
Simulating Flow and Transport Uncertainty Associated with Water Supply Well Modification Based upon Well Profiling and Pumping Test Data.(2010).
Status and conservation of lampreys in California. Biology, management, and conservation, of lampreys in North America. 72, 279-292.(2010).
Sockeye salmon (Oncorhynchus nerka) return after an absence of nearly 90 years: a case of reversion to anadromy. Canadian Journal of Fisheries and Aquatic Sciences. 68,(2011).
Spring Snowmelt Recession in Rivers of the Western Sierra Nevada Mountains. Hydrologic Sciences. Master of Sciences, 67.(2011).
Synthesis of the effects to fish species of two management scenarios for the Secretarial Determination on removal of the lower four dams on the Klamath River.(2011).
Southern Steelhead, Hard Woody Debris, and Temperature in a California Central Coast Watershed. Transactions of the American Fisheries Society. 141(2), 275-284.(2012).
Stream temperature sensitivity to climate warming in California’s Sierra Nevada: impacts to coldwater habitat. Climatic Change. 1-22.(2012).
Simplified 1-D Hydrodynamic and Salinity Transport Modeling of the Sacramento–San Joaquin Delta: Sea Level Rise and Water Diversion Effects. San Francisco Estuary & Watershed Science. 11(4), 1-22.(2013).
Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytcha.. Marine Ecology Progress Series. 487,(2013).
Some Curious Things About Water Management. Journal of Water Resources Planning and Management. 139(1), 1-2.(2013).
Stream Habitat Associations of the Foothill Yellow-Legged Frog (Rana boylii): The Importance of Habitat Heterogeneity. Ecohydraulics: An Integrated Approach. 193-212.(2013).