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Adans, J.R., & Moyle P. B. (1975).  Some effects of impoundments on populations of stream fish. (Moyle, P. B., & Koch D.L., Ed.).Symposium on Trout/Nongame Fish Relationships in Streams. 17, 31-40.
Moyle, P. B., & Baltz D. M. (1979).  Stillwaters west. Rod and Reel Magazine . Part I, September/October; Part II, November/December, Part I pp20-26; Part II pp22-27.
Moyle, P. B. (1980).  Sixteen species accounts of California endemic fishes. (Lee, D.S., Ed.).Atlas of North American Freshwater Fishes. 123, 164, 199, 200, 209, 345, 346, 347, 384, 385, 391, 582, 777, 803, 815, 819.
Brown, L. R., & Moyle P. B. (1994).  Status of coho salmon (Oncorhynchus kisutch) in California. North American Journal of Fisheries Management . 14, 237-261.
Meng, L., & Moyle P. B. (1995).  Status of Splittail in the Sacramento-San Joaquin Estuary. Transactions of the American Fisheries Society. 124(4), 538-549.
Moyle, P. B. (1996).  Status of aquatic habitat types. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 945-952.
Moyle, P. B., Yoshiyama R. M., & Knapp R. A. (1996).  Status of fish and fisheries. Sierra Nevada ecosystem project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 953-973.
Mount, JF., & Twiss R. (2005).  Subsidence, sea level rise, and seismicity in the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 3(1), 
Medellín-Azuara, J. (2005).  Systems Analysis for Restoring the Colorado River Delta in Mexico. Graduate Student Symposium.
Medellín-Azuara, J., & Lund J. R. (2005).  Systems Analysis for Restoring the Lower Colorado River Delta. 2005 International Law Conference: Freshwater Ecosystem Restoration: The Role of Law Process and Lawyers.
Hanak, E., Phillips C., Lund J. R., Durand J. R., Mount JF., & Moyle P. B. (2013).  Scientist and Stakeholder Views on the Delta Ecosystem. 106.
Fleenor, W. E., & Bombardelli F. (2013).  Simplified 1-D Hydrodynamic and Salinity Transport Modeling of the Sacramento–San Joaquin Delta: Sea Level Rise and Water Diversion Effects. San Francisco Estuary & Watershed Science. 11(4), 1-22.PDF icon eScholarship UC item 3km0d0kt.pdf (5.27 MB)
Woodson, LE., Well BK., Weber PK., MacFarlane RB., Whitman GE., & Johnson RC. (2013).  Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytcha.. Marine Ecology Progress Series. 487,
Lund, J. R. (2013).  Some Curious Things About Water Management. Journal of Water Resources Planning and Management. 139(1), 1-2.PDF icon curious.jrl_.pdf (47.31 KB)
Yarnell, S. M. (2013).  Stream Habitat Associations of the Foothill Yellow-Legged Frog (Rana boylii): The Importance of Habitat Heterogeneity. Ecohydraulics: An Integrated Approach. 193-212.PDF icon Chapter 11 in Ecohydraulics: An Integrated Approach (3.99 MB)
Hanak, E., Durand J. R., Fleenor W. E., Gray B. E., Medellín-Azuara J., Mount JF., et al. (2013).  Stress Relief: Prescriptions for a Healthier Delta Ecosystem. 32.PDF icon Main Report Delta Stressors (9.72 MB)
O'Rear, T., & Moyle P. B. (2013).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2010 - December 2010.