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Cloern, J.E., Kay J., Kimmerer W., Mount JF., Moyle P. B., & Mueller-Solger A. (2017).  Water wasted to the sea? . San Francisco Estuary and Watershed Science. 15(2), 
Coules, D., & Moyle P. B. (1979).  Wilderness and fisheries. A Supplement to Wilderness Record. July-August, 8pp.
Duffy, W. G., Garone P., Grewell B. J., Kahara S., Fleskes J., Helm B., et al. (2016).  Wetlands. Ecosystems of California. p 669-692,
Jeffres, C., & Moyle P. B. (2012).  When Good Fish Make Bad Decisions: Coho Salmon in an Ecological Trap. North American Journal of Fisheries Management. 32, 87-92.
Mathias, M. E., & Moyle P. B. (1992).  Wetland and aquatic habitats. Agriculture, Ecosystems & Environment. 42(1-2), 165 - 176.
Medellín-Azuara, J., Mendoza-Espinosa L., Lund J. R., Waller-Barrera C., & Howitt R. (2008).  Water Supply for Baja California; Economic-Engineering Analysis for Agricultural, Environmental and Urban Demands.
Medellín-Azuara, J., Connell C., Madani K., Lund J. R., & Howitt R. (2009).  Water Management Adaptation with Climate Change. . 30.
Medellín-Azuara, J., Mendoza-Espinosa L., & Lund J. R. (2008).  Water supply for Baja California -development of CALVIN planning model, México. Border Infrastructure Conference.
Medellín-Azuara, J., Mirchi A., & Madani K. (2011).  Water supply for agricultural, environmental and urban uses in California’s borderlands. 201-212.
Medellín-Azuara, J., Madani K., Connell C., Bates M., Sicke W. S., & Lund J. R. (2010).  The Water 2.0 Social Calendar. California Water and Environmental Modeling Forum.
Medellín-Azuara, J., Lund J. R., & Howitt R. (2007).  Water Supply Analysis for Restoring the Colorado River Delta, Mexico. Journal of Water Resources Planning and Management. 133, 462-471.
Moughamian, R J. (2005).  Water Quality Modeling and Monitoring in the California North Delta Area. Civil and Environmental Engineering . Master of Science,
Moyle, P. B. (2012).  Writing review papers. (Jennings, C. A., Lauer T. E., & Vondracek B., Ed.).Scientific Communication for Natural Resource Professionals. 155-162.
Moyle, P. B., & F Senanayake R. (1982).  Wildlife conservation in Sri Lanka: a Buddhist dilemma.. Tigerpaper. 9(4), 1-4.
Moyle, P. B., Bennett W. A., Durand J. R., Fleenor W. E., Gray B. E., Hanak E., et al. (2012).  Where the Wild Things Aren’t Making the Delta a Better Place for Native Species. Public Policy Institute of California.
Munsch, S. H., Greene C. M., Johnson R. C., Satterthwaite W. H., Imaki H., & Brandes P. L. (2019).  Warm, dry winters truncate timing and size distribution of seaward‐migrating salmon across a large, regulated watershed. Ecological Application.,