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Coules, D., & Moyle P. B. (1979).  Wilderness and fisheries. A Supplement to Wilderness Record. July-August, 8pp.
Mathias, M. E., & Moyle P. B. (1992).  Wetland and aquatic habitats. Agriculture, Ecosystems & Environment. 42(1-2), 165 - 176.
Moughamian, R J. (2005).  Water Quality Modeling and Monitoring in the California North Delta Area. Civil and Environmental Engineering . Master of Science,
Medellín-Azuara, J., Lund J. R., & Howitt R. (2007).  Water Supply Analysis for Restoring the Colorado River Delta, Mexico. Journal of Water Resources Planning and Management. 133, 462-471.
Medellín-Azuara, J., Madani K., Connell C., Bates M., Sicke W. S., & Lund J. R. (2010).  The Water 2.0 Social Calendar. California Water and Environmental Modeling Forum.
Rheinheimer, D. E., Ligare S. T., & Viers J. H. (2012).  Water and Energy Sector Vulnerability to Climate Warming in the Sierra Nevada: Simulating the Regulated Rivers of California’s West Slope Sierra Nevada . Our Changing Climate.
Null, S. E., & Viers J. H. (2012).  Water and Energy Sector Vulnerability to Climate Warming in the Sierra Nevada: Water Year Classification in Non-Stationary Climates. Our Changing Climate.
Hanak, E., Lund J. R., W Cutter B., Gray B. E., Houston D., Howitt R., et al. (2012).  Water and the California Economy.
Thompson, L., Escobar M., Mosser C., Purkey D., Yates D., & Moyle P. B. (2012).  Water Management Adaptations to Prevent Loss of Spring-Run Chinook Salmon in California under Climate Change . Journal of Water Resources Planning and Management. 138(5), 465-478.PDF icon chinook.pdf (2.46 MB)
Grantham, T. E., Figueroa R., & Prat N. (2012).  Water management in mediterranean river basins: a comparison of management frameworks, physical impacts, and ecological responses. Hydrobiologia. Online First,
Gailey, R. (2012).  Water Supply Well Rehabilitation Methods: Alternatives and Successes.
Jeffres, C., & Moyle P. B. (2012).  When Good Fish Make Bad Decisions: Coho Salmon in an Ecological Trap. North American Journal of Fisheries Management. 32, 87-92.
Moyle, P. B., Bennett W. A., Durand J. R., Fleenor W. E., Gray B. E., Hanak E., et al. (2012).  Where the Wild Things Aren’t Making the Delta a Better Place for Native Species. Public Policy Institute of California.
Moyle, P. B. (2012).  Writing review papers. (Jennings, C. A., Lauer T. E., & Vondracek B., Ed.).Scientific Communication for Natural Resource Professionals. 155-162.
Cloern, J.E., Kay J., Kimmerer W., Mount JF., Moyle P. B., & Mueller-Solger A. (2017).  Water wasted to the sea? . San Francisco Estuary and Watershed Science. 15(2),