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Mount, JF., Purdy S., Epke G., Finger M., Lusardi R. A., Marks N., et al. (2010).  Confluence: A Natural and Human History of the Tuolumne River Watershed.
Mount, JF., & Twiss R. (2005).  Delta Levee Vulnerability Study. San Francisco Estuary and Watershed Science. 3(1), 
Mount, JF., Moyle P. B., Lund J. R., & Doremus H. (2007).  Regional Agreements, Adaptation, and Climate Change: New Approaches to FERC Licensing in the Sierra Nevada, California.
Mount, JF., Yarnell S. M., Kupferberg S., & Lind A. J. (2009).  Pulsed Flow Effects on the Foothill Yellow-Legged Frog (Rana boylii): Integration of Empirical, Experimental and Hydrodynamic Modeling.
Mount, JF., Fogg G., Kavvas L., Fleckenstein J., Anderson M., Chen Z Q., et al. (2001).  Linked Surface Water-Groundwater Model for the Cosumnes River Watershed: Hydrologic Evaluation of Management Options to Restore Fall Flows.
Mount, JF., & Twiss R. (2005).  Subsidence, sea level rise, and seismicity in the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 3(1), 
Mount, JF., Fleenor W. E., Gray B. E., Herbold B., & Kimmerer W. (2013).  Panel Review of the Draft Bay Delta Conservation Plan. 146.PDF icon FINAL-BDCP-REVIEW-for-TNC-and-AR-Sept-2013.pdf (5 MB)
Mount, JF., Fleenor W. E., Herbold B., & Kimmerer W. (2014).  The Draft Bay-Delta Conservation Plan: Assessment of Environmental Performance and Governance. West-Northwest Journal of Environmental Law & Policy.
Mount, JF., Bennett W. A., Durand J. R., Fleenor W. E., Hanak E., Lund J. R., et al. (2012).  Aquatic Ecosystem Stressors in the Sacramento–San Joaquin Delta. 22.
Mount, JF., Gray B.., Chappelle C., Gartrell G., Grantham T. E., Moyle P. B., et al. (2017).  Managing California's Freshwater Ecosystems: Lessons from the 2012-16 Drought.. Public Policy Institute of California.