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Brown, L. R., & Moyle P. B. (1991).  Changes in Habitat and Microhabitat Partitioning within an Assemblage of Stream Fishes in Response to Predation by Sacramento Squawfish (Ptychocheilus grandis). Canadian Journal of Fisheries and Aquatic Sciences. 48(5), 849-856.
Moyle, P. B., Bennett W. A., Dahm C., Durand J. R., Enright C., Fleenor W. E., et al. (2010).  Changing ecosystems: a brief ecological history of the Delta. 7.
Moyle, P. B. (1998).  Channelization (p. 121) and Dams, effects of (p. 170). (Calow, P., Ed.).Encyclopedia of Ecology and Environmental Management. 121, 170.
Yoshiyama, R. M., Moyle P. B., Gerstung E. R., & Fisher F. W. (2000).  Chinook Salmon in the California Central Valley: An Assessment. Fisheries. 25(2), 6-20.
Quiñones, R. M., & Moyle P. B. (2014).  Climate change vulnerability of freshwater fishes in the San Francisco Bay Area. San Francisco Estuary and Watershed Science. 12(3), PDF icon Quinones and Moyle 2014 cc in SFBA.pdf (324.79 KB)
Moyle, P. B. (2013).  Climate Change Vulnerability of Native and Alien Freshwater Fishes of California: A Systematic Assessment Approach . (Kiernan, J. D., Crain P. K., & Quiñones R. M., Ed.).PLoS ONE. PDF icon journal.pone_.0063883.pdf (734.37 KB)
Moyle, P. B., Kiernan J. D., Crain P. K., & Quiñones R. M. (2013).  Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach. PDF icon Moyle et al 2013 fw fishes cc Plos One.pdf (734.37 KB)
Adams, P. B., Botsford L. W., Gobalet K. W., Leidy R. A., McEwan D. R., Moyle P. B., et al. (2007).  Coho Salmon are Native South of San Francisco Bay: A Reexamination of North American Coho Salmon's Southern Range Limit. Fisheries. 32(9), 441-451.
Baird, I., Hogan Z., Phylaivanh B., & Moyle P. B. (2001).  A Communal Fishery for the Migratory Catfish Pangasius macronemain the Mekong River. Asian Fisheries Science. 14, 25–41.
Moyle, P. B., & Li H. W. (1979).  Community ecology and predator-prey relations in warmwater streams. (Clepper, H. W., Ed.).Predator-prey systems in fisheries management. 171–180.
Moyle, P. B. (1969).  Comparative Behavior of Young Brook Trout of Domestic and Wild Origin. The Progressive Fish-Culturist. 31(1), 51-56.
Brown, L. R., Matern S. A., & Moyle P. B. (1995).  Comparative ecology of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River, California. Environmental Biology of Fishes. 42(4), 329-343.
Lund, J. R., Hanak E., Fleenor W. E., Bennett W. A., Howitt R., Mount JF., et al. (2010).  Comparing Futures for the Sacramento-San Joaquin Delta. Freshwater Ecology Series. 3, 231.
Lund, J. R., Hanak E., Fleenor W. E., Bennett W. A., Howitt R., Mount JF., et al. (2008).  Comparing Futures for the Sacramento-San Joaquin Delta.
Lund, J. R., Hanak E., Fleenor W. E., Bennett W. A., Howitt R., Mount JF., et al. (2010).  Comparing Futures for the Sacramento-San Joaquin Delta. Freshwater ecology series. 230.
Baltz, D. M., Moyle P. B., & Knight N. J. (1982).  Competitive Interactions Between Benthic Stream Fishes, Riffle Sculpin, Cottus gulosus, and Speckled Dace, Rhinichthys osculus. Canadian Journal of Fisheries and Aquatic Sciences. 39(11), 1502-1511.
Durand, J. R., Lusardi R. A., Suddeth R., Carmona-Catot G., Connell C., Gatzke S., et al. (2009).  Conceptual Ecosystem Model of the Sub-Arctic River Response to Climate Change: Kobuk River, Alaska.
Opperman, J.J., & Moyle P. B. (2005).  A conceptual model for floodplain restoration. Flood Management Association News . 15(4), 7-10.
Stanford, J., Duffy W., Asarian E., Cluer B., Detrich P., Eberle L., et al. (2011).  Conceptual model for restoration of the Klamath River. (Thorsteinson, L., VanderKooi S., & Duffy W., Ed.).Proceedings of the Klamath Basin Science Conference, Medford, Oregon, February 1–5, 2010.
Kopf, R.K., Nimmo D.G., Humphries P., Baumsteiger J., Bode M., Bond N.R., et al. (2017).  Confronting the risks of large-scale invasive species control. Nature Ecology & Evolution. 1,
Moyle, P. B. (2000).  Connecting the land to the sea: anadromous fishes. (Abell, R. A., & 10 others., Ed.).Freshwater Ecoregions of North America: a Conservation Assessment. 46-47.
F Senanayake, R., & Moyle P. B. (1982).  Conservation of freshwater fishes of Sri Lanka. Biological Conservation. 22(3), 181 - 195.
Moyle, P. B. (1995).  Conservation of native freshwater fishes in the Mediterranean-type climate of California, USA: A review. Biological Conservation. 72(2), 271 - 279.
Moyle, P. B., & F Senanayake R. (1981).  Conservation of ornamental freshwater fishes in Sri Lanka.. Tigerpaper. 8, 1-3.
Leidy, R. A., & Moyle P. B. (1997).  Conservation Status of the World's Fish Fauna: An Overview. (Fiedler, P. L., & Kareiva P. M., Ed.).Conservation Biology For the Coming Decade. 187-227.
Moyle, P. B., & Ellison J. P. (1991).  A conservation-oriented classification system for the inland waters of California. California Fish and Game. 77, 161-180.
Medellín-Azuara, J., Durand J. R., Fleenor W. E., Hanak E., Lund J. R., Moyle P. B., et al. (2013).  Costs of Ecosystem Management Actions for the Sacramento-San Joaquin Delta.
Courteney, WR., & Moyle P. B. (1992).  Crimes against biodiversity: the lasting legacy of fish introductions. Transactions of the 57th North American Wildlife and Natural Resource Conference. 57, 365-372.
D
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. PDF icon Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California (655.17 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. PDF icon Quinones et al 2014 dam removal.pdf (639.53 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2015).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. 25(1), 195-215.
Moyle, P. B. (1994).  The Decline of Anadromous Fishes in California. Conservation Biology. 8(3), 869-870.
Moyle, P. B., & Nichols R. D. (1974).  Decline of the Native Fish Fauna of the Sierra Nevada Foothills, Central California. American Midland Naturalist. 92(1), 72-83.
O'Rear, T. (2018).  Delta Smelt and Salmon Habitats Beyond the Estuary. (Moyle, P. B., & Durand J. R., Ed.). PDF icon Delta Smelt Salmon Beyond Estuary (BDSC) - 1 of 2.pdf (1.68 MB)PDF icon Delta Smelt Salmon Beyond Estuary (BDSC) - 2 of 2.pdf (1.6 MB)PDF icon Delta Smelt and Salmon Beyond the Estuary - Abstract.pdf (95.01 KB)
Moyle, P. B., Hobbs J., & Durand J. R. (2018).  Delta Smelt and the Politics of Water in California. Fisheries. 43,
Moyle, P. B., Brown L. R., Durand J. R., & Hobbs J. A. (2016).  Delta Smelt: Life History and Decline of a Once Abundant Species in the San Francisco Estuary. San Francisco Estuary and Watershed Science.
Moyle, P. B. (1982).  Desert fishes. Review of R. J. Naiman and D. L. Soltz (Editors), Fishes in North American Deserts. Environmental Biology of Fishes. 7, 395-397.
Moyle, P. B., & Sato G. M. (1991).  On the design of preserves to protect native fishes.. (Minckley, W. L., & Deacon J. E., Ed.).Battle against extinction: native fish management in the American West. 155-169.
Fleenor, W. E., Bennett W. A., Moyle P. B., & Lund J. R. (2010).  On developing prescriptions for freshwater flows to sustain desirable fishes in the Sacramento-San Joaquin Delta. 46.PDF icon Fish_Flows_for_the_Delta_15feb2010.pdf (772.13 KB)
Fleenor, W. E., Bennett W. A., Moyle P. B., & Lund J. R. (2010).  On developing prescriptions for freshwater flows to sustain desirable fishes in the Sacramento-San Joaquin Delta. 46.
Aparicio, E., Carmona-Catot G., Moyle P. B., & García-Berthou E. (2011).  Development and evaluation of a fish-based index to assess biological integrity of Mediterranean streams. Aquatic Conservation: Marine and Freshwater Ecosystems. 21(4), 324–337.
Feyrer, F., Herbold B., Matern S. A., & Moyle P. B. (2003).  Dietary shifts in a stressed fish assemblage: Consequences of a bivalve invasion in the San Francisco Estuary. Environmental Biology of Fishes. 67(3), 277-288.
O’Rear, T., & Moyle P. B. (2015).  Diets of two alien predators - adult striped bass and white catfish - in Suisun Marsh. PDF icon ORear CA NV AFS Presentation Striped Bass White Catfish Diets2015.pdf (2.89 MB)
Moyle, P. B., & Bacon J. (1969).  Distribution and abundance of molluscs in a freshwater environment. Journal of the Minnesota Academy of Science. 35, 82–85.
Kershner, JL., Snider WM., Turner DM., & Moyle P. B. (1992).  Distribution and sequencing of mesohabitats: are there differences at the reach scale?. Rivers. 3, 179–190.
Brown, L. R., & Moyle P. B. (1993).  Distribution, ecology, and status of the fishes of the San Joaquin River drainage, California. California Fish and Game. 79(3), 96–114.