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1991
Moyle, P. B. (1991).  Ecology of introduced fishes and aquatic invertebrates in North America. (Yount, J. D., Ed.). 1-3.
Moyle, P. B., Kennedy T., Kuda D., Martin L., & Grant G. (1991).  FISHES OF BLY TUNNEL, LASSEN COUNTY, CALIFORNIA. The Great Basin Naturalist. 51(3), 267-270.
Campbell, E. A., & Moyle P. B. (1991).  Historical and recent population sizes of spring-run chinook salmon in California. (Hassler, T. J., Ed.).Proceedings, Northeast Pacific Chinook and Coho Salmon Workshop. 155-216.
Moyle, P. B., & Moyle M. A. (1991).  Introduction to fish imagery in art. Environmental Biology of Fishes. 31(1), 5-23.
Moyle, P. B. (1991).  Livebearing fish in evolutionary research. Review of G. K. Meffe and F. F. Snelson (Editors), Ecology and Evolution of Livebearing Fishes (Poeciliidae). Prentice Hall, Englewood Cliffs, New Jersey. Evolution. 45, 453pp.
Moyle, P. B. (1991).  Review of R. Pethiyagoda, Freshwater Fishes of Sri Lanka. The Wildlife Heritage Trust of Sri Lanka, Colombo. . Copeia . 1991, 1166-1177.
Moyle, P. B. (1991).  Review of Robert J. Wooton, Ecology of Teleost Fishes. Chapman and Hall, New York.. Quarterly Review of Biology . 66, 404pp.
Baltz, D. M., Vondracek B., Brown L. R., & Moyle P. B. (1991).  Seasonal Changes in Microhabitat Selection by Rainbow Trout in a Small Stream. Transactions of the American Fisheries Society. 120(2), 166-176.
1992
Courteney, WR., & Moyle P. B. (1992).  Crimes against biodiversity: the lasting legacy of fish introductions. Transactions of the 57th North American Wildlife and Natural Resource Conference. 57, 365-372.
Kershner, JL., Snider WM., Turner DM., & Moyle P. B. (1992).  Distribution and sequencing of mesohabitats: are there differences at the reach scale?. Rivers. 3, 179–190.
Moyle, P. B., & Yoshiyama R. M. (1992).  Fishes, aquatic diversity management areas, and endangered species: a plan to protect California's native aquatic biota. California Policy Seminar.
Brown, L. R., Moyle P. B., Bennett W. A., & Quelvog B. D. (1992).  Implications of morphological variation among populations of California roach Lavinia symmetricus (Cyprinidae) for conservation policy. Biological Conservation. 62(1), 1 - 10.
Moyle, P. B., Herbold B., Stevens D. E., & Miller L. W. (1992).  Life History and Status of Delta Smelt in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society. 121(1), 67-77.
Moyle, P. B., & Leidy R. A. (1992).  Loss of Biodiversity in Aquatic Ecosystems: Evidence from Fish Faunas. (Fiedler, P. L., & Jain S. K., Ed.).Conservation Biology: The Theory and Practice of Nature Conservation, Preservation, and Management. 128-169.
Brown, L. R., & Moyle P. B. (1992).  Native fishes of the San Joaquin drainage: status of a remnant fauna and its habitats. (Williams, D. L., Byrne S., & Rado T. A., Ed.).Endangered and sensitive species of the San Joaquin Valley, California: their biology, management and conservation. 89–98.
Hetbold, B., Jassby A.D., & Moyle P. B. (1992).  Status and trends report on aquatic resources in the San Francisco Estuary. 257.
Moyle, P. B. (1992).  True smelts. (Leet, W. S., Dewees C. M., & Havern C. W., Ed.).California's Living Marine Resources and Their Utilization. 75-78.
Mathias, M. E., & Moyle P. B. (1992).  Wetland and aquatic habitats. Agriculture, Ecosystems & Environment. 42(1-2), 165 - 176.
1993
Brown, L. R., & Moyle P. B. (1993).  Distribution, ecology, and status of the fishes of the San Joaquin River drainage, California. California Fish and Game. 79(3), 96–114.
Moyle, P. B. (1993).  Fish: an enthusiast's guide. 272.
Strange, E. M., Moyle P. B., & Foin T. C. (1993).  Interactions between stochastic and deterministic processes in stream fish community assembly. Environmental Biology of Fishes. 36(1), 1-15.
Baltz, D. M., & Moyle P. B. (1993).  Invasion Resistance to Introduced Species by a Native Assemblage of California Stream Fishes. Ecological Applications. 3(2), 246-255.
Li, H. W., & Moyle P. B. (1993).  Management of introduced fishes. (Kohler, C., & Hubert W., Ed.).Inland fisheries management in North America. 282–307.
Moyle, P. B. (1993).  Saving California's salmon: The legacy of Ishi. Trout. Summer, 14-17.
1994
Moyle, P. B. (1994).  Biodiversity, biomonitoring, and the structure of stream fish communities. (Loeb, S., & Spacie A., Ed.).Biological monitoring of aquatic systems. 171–186.
Meng, L., Moyle P. B., & Herbold B. (1994).  Changes in Abundance and Distribution of Native and Introduced Fishes of Suisun Marsh. Transactions of the American Fisheries Society. 123(4), 498-507.
Moyle, P. B. (1994).  The Decline of Anadromous Fishes in California. Conservation Biology. 8(3), 869-870.
Moyle, P. B., & Li H.W. (1994).  Nuisance essay: good report but should go much farther. Fisheries. 19, 22-23.
Moyle, P. B., & Yoshiyama R. M. (1994).  Protection of Aquatic Biodiversity in California: A Five-tiered Approach. Fisheries. 19(2), 6-18.
Brown, L. R., & Moyle P. B. (1994).  Status of coho salmon (Oncorhynchus kisutch) in California. North American Journal of Fisheries Management . 14, 237-261.
1995
Stanley, S. E., Moyle P. B., & H. Shaffer B. (1995).  Allozyme Analysis of Delta Smelt, Hypomesus transpacificus and Longfin Smelt, Spirinchus thaleichthys in the Sacramento-San Joaquin Estuary, California. Copeia. 1995(2), 390-396.
Marchetti, M. P., & Moyle P. B. (1995).  The case of Putah Creek: Conflicting values complicate stream protection. California Agriculture. 49(6), 73-78.PDF icon Putah Creek CA Agriculture.pdf (1.1 MB)
Marchetti, M. P., & Moyle P. B. (1995).  The case of Putah Creek: Conflicting values complicate stream protection. California Agriculture. 49(6), 73–78.
Brown, L. R., Matern S. A., & Moyle P. B. (1995).  Comparative ecology of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River, California. Environmental Biology of Fishes. 42(4), 329-343.
Moyle, P. B. (1995).  Conservation of native freshwater fishes in the Mediterranean-type climate of California, USA: A review. Biological Conservation. 72(2), 271 - 279.
Moyle, P. B., Yoshiyama R. M., Williams J. E., & Wikramanayake E. D. (1995).  Fish species of special concern in California. 272.
Meng, L., & Moyle P. B. (1995).  Status of Splittail in the Sacramento-San Joaquin Estuary. Transactions of the American Fisheries Society. 124(4), 538-549.
1996
Jr, WR. Courtenay, & Moyle P. B. (1996).  Biodiversity, fishes, and the introduction paradigm. (Szaro, R. C., & Johnston D. W., Ed.).Biodiversity in Managed Landscapes. 239–252.
Moyle, P. B., & Light T. (1996).  Biological invasions of fresh water: Empirical rules and assembly theory. Biological Conservation. 78(1-2), 149 - 161.
Moyle, P. B., & Randall P. J. (1996).  Biotic integrity of watersheds. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 975-985.
Moyle, P. B., & Light T. (1996).  Fish Invasions in California: Do Abiotic Factors Determine Success?. Ecology. 77(6), 1666-1670.
Moyle, P. B., & Cech J. J. (1996).  Fishes: An Introduction to Ichthyology. 590.
Yoshiyama, R. M., Gerstung E. R., Fisher F. W., & Moyle P. B. (1996).  Historical and present distribution of Chinook salmon in the Central Valley drainage of California. Sierra Nevada Ecosystem Project: Final report to Congress , Vol. III, assessments, commissioned reports, and background information. 3, 309-362.
Moyle, P. B., Kattlemann R., Zomer R., & Randall PJ. (1996).  Management of riparian areas in the Sierra Nevada. Sierra Nevada Ecosystem Project: Final Report to Congress Vol. III, assessments, commissioned reports, and background information. 3, 1-37.
Moyle, P. B. (1996).  Potential aquatic diversity management areas. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 1493-1503.
Moyle, P. B., Randall P. J., & Yoshiyama R. M. (1996).  Potential aquatic diversity management areas in the Sierra Nevada. Sierra Nevada Ecosystem Project: Final report to Congress , Vol. III, assessments, commissioned reports, and background information. 3, 409-478.
Carey, J.R., Moyle P. B., Rejmánek M., & Vermeij G. (1996).  Preface. (Carey, J.R., Moyle P. B., Rejmánek M., & Vermeij G., Ed.).Biological Conservation, Invasion biology. 78, 1 - 2.
Carey, J.R., Moyle P. B., Rejmánek M., & Vermeij G. (1996).  Preface. (Carey, J.R., Moyle P. B., Rejmánek M., & Vermeij G., Ed.).Biological Conservation, Invasion biology. 78, 1 - 2.
Moyle, P. B., Pine R., Brown L. R., Hanson C.H., Herbold B., Lentz K.M., et al. (1996).  Recovery plan for the Sacramento-San Joaquin Delta native fishes. 193.
Moyle, P. B. (1996).  Status of aquatic habitat types. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 945-952.