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Moyle, P. B., Crain P. K., Whitener K., & Mount JF. (2003).  Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.
Moyle, P. B. (1991).  Review of Robert J. Wooton, Ecology of Teleost Fishes. Chapman and Hall, New York.. Quarterly Review of Biology . 66, 404pp.
Moyle, P. B., & Sato G. M. (1991).  On the design of preserves to protect native fishes.. (Minckley, W.. L., & Deacon J.. E., Ed.).Battle against extinction: native fish management in the American West. 155-169.
Moyle, P. B., Mathews S. B., & Bonderson N. (1974).  Feeding Habits of the Sacramento Perch, Archoplites interruptus. Transactions of the American Fisheries Society. 103(2), 399-402.
Moyle, P. B., Manfree A. D., & Fiedler P. L. (2014).  Suisun Marsh: Ecological History and Possible Futures. 256.
Moyle, P. B., & Yoshiyama R. M. (1997).  The role of adaptive management in restoring chinook salmon to the Tuolumne River. (Wang, S. S. Y., & Carstens T., Ed.).Environmental and Coastal Hydraulics: Protecting the Aquatic Habitat. 557-562.
Moyle, P. B., & Baltz D. M. (1985).  Microhabitat Use by an Assemblage of California Stream Fishes: Developing Criteria for Instream Flow Determinations. Transactions of the American Fisheries Society. 114(5), 695-704.
Moyle, P. B., Quiñones R. M., & Kiernan J. D. (2012).  Effects of Climate Change on the Inland Fishes of California: With Emphasis on the San Francisco Estuary Region. Our Changing Climate.
Moyle, P. B. (1980).  Review of D. L. Soltz and R. J. Naiman, The Natural History of Native Fishes in the Death Valley System. Natural History Museum of Los Angeles County Science Series 30. . Environmental Biology of Fishes . 5(1), 96.
Moyle, P. B. (2004).  Review of Snakehead: fish out of water by Jay Dolan. CoCopeia . 710-711.
Moyle, P. B., & Light T.. (1996).  Fish Invasions in California: Do Abiotic Factors Determine Success?. Ecology. 77(6), 1666-1670.
Moyle, P. B. (1980).  Sixteen species accounts of California endemic fishes. (Lee, D.S.., Ed.).Atlas of North American Freshwater Fishes. 123, 164, 199, 200, 209, 345, 346, 347, 384, 385, 391, 582, 777, 803, 815, 819.
Moyle, P. B., Kiernan J. D., Crain P. K., & Quiñones R. M. (2013).  Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach. PDF icon Moyle et al 2013 fw fishes cc Plos One.pdf (734.37 KB)
Moyle, P. B. (1997).  The importance of an historical perspective: Fish introductions.. Fisheries. 22(10), 14.
Moyle, P. B. (1992).  True smelts. (Leet, W.. S., Dewees C.. M., & Havern C.. W., Ed.).California's Living Marine Resources and Their Utilization. 75-78.
Moyle, P. B. (1975).  California Trout Streams: the way they were, probably. (Moyle, P. B., & Koch D.L.., Ed.).Symposium on trout-non-game relationships in streams. 17, 9-19.
Moyle, P. B., & Bennett W. A. (2008).  The future of the delta ecosystem and its fish. Technical Appendix D to Lund, J., et al., Comparing futures for the Sacramento-San Joaquin delta. 38.
Moyle, P. B. (1970).  Occurrence of king (chinook) salmon in the Kings River, Fresno County. California Fish and Game . 56, 314-315.
Moyle, P. B., & Randall P. J. (1998).  Evaluating the Biotic Integrity of Watersheds in the Sierra Nevada, California. Conservation Biology. 12(6), 1318–1326.
Moyle, P. B. (1985).  Exotic fishes and vacant niches: Review of W. R. Courtenay, Jr. and J. R. Stauffer, Jr. (Editors), Distribution, Biology, and Management of Exotic Fishes. The Johns Hopkins University Press, Baltimore, Maryland. Environmental Biology of Fishes . 13, 315-317.
Moyle, P. B. (1987).  Review of C. H. Hocutt and E. O. Wiley, The Zoogeography of North American Freshwater Fishes. Aquaculture . 62, 171-172.
Moyle, P. B., Israel J. A., & Purdy S. (2008).  Salmon, Steelhead and Trout in California: Status of an Emblematic Fauna.
Moyle, P. B. (1982).  Desert fishes. Review of R. J. Naiman and D. L. Soltz (Editors), Fishes in North American Deserts. Environmental Biology of Fishes. 7, 395-397.
Moyle, P. B., Bennett W. A., Dahm C., Durand J. R., Enright C., Fleenor W. E., et al. (2010).  Changing ecosystems: a brief ecological history of the Delta. 7.
Moyle, P. B., Kattlemann R., Zomer R., & Randall PJ. (1996).  Management of riparian areas in the Sierra Nevada. Sierra Nevada Ecosystem Project: Final Report to Congress Vol. III, assessments, commissioned reports, and background information. 3, 1-37.
Moyle, P. B., & Baltz D. M. (1983).  Fish populations of Eleanor Reservoir, Yosemite National Park. (Van Riper, C.., Whittig L.. D., & Murphey M.. L., Ed.).Proceedings of the First Biennial Conference on Research in California's National Parks. 183-186.
Moyle, P. B. (2013).  Novel Aquatic Ecosystems: The New Reality For Streams In California And Other Mediterranean Climate Regions. River Research and Applications. PDF icon Novel aquatic ecosystems (2.62 MB)
Moyle, P. B., Brown L. R., Durand J. R., & Hobbs J. A. (2016).  Delta Smelt: Life History and Decline of a Once Abundant Species in the San Francisco Estuary. San Francisco Estuary and Watershed Science.
Moyle, P. B. (2000).  Aliens in fresh water. Review of R. Claudi and J. H. Leach, eds. 2000. Non-indigenous freshwater organisms: vectors, biology, and impacts. . Ecology . 81, 2945-2946.
Moyle, P. B. (1995).  Conservation of native freshwater fishes in the Mediterranean-type climate of California, USA: A review. Biological Conservation. 72(2), 271 - 279.
Moyle, P. B., & Holzhauser N. J. (1978).  Effects of the Introduction of Mississippi Silverside (Menidia audens) and Florida Largemouth Bass (Micropterus salmoides floridanus) on the Feeding Habits of Young-of-year Largemouth Bass in Clear Lake, California. Transactions of the American Fisheries Society. 107(4), 574-582.
Moyle, P. B. (2012).  Writing review papers. (Jennings, C. A., Lauer T. E., & Vondracek B., Ed.).Scientific Communication for Natural Resource Professionals. 155-162.
Moyle, P. B., Baxter R. D., Sommer T., Foin T. C., & Matern S. A. (2004).  Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science. 2(2), 1-47.
Moyle, P. B. (1991).  Livebearing fish in evolutionary research. Review of G. K. Meffe and F. F. Snelson (Editors), Ecology and Evolution of Livebearing Fishes (Poeciliidae). Prentice Hall, Englewood Cliffs, New Jersey. Evolution. 45, 453pp.
Moyle, P. B., Kennedy T., Kuda D., Martin L., & Grant G. (1991).  FISHES OF BLY TUNNEL, LASSEN COUNTY, CALIFORNIA. The Great Basin Naturalist. 51(3), 267-270.
Moyle, P. B., & Nichols R. D. (1974).  Decline of the Native Fish Fauna of the Sierra Nevada Foothills, Central California. American Midland Naturalist. 92(1), 72-83.
Moyle, P. B. (1964).  Populations of peritrichs on the pond snail, Physa gyrina Say. Journal of the Minnesota Academy of Science . 31, 125-130.
Moyle, P. B., Marchetti M. P., Baldrige J., & Taylor T. L. (1998).  Fish Health and Diversity: Justifying Flows for a California Stream. Fisheries. 23(7), 6-15.
Moyle, P. B., Daniels R. A., Herbold B., & Baltz D. M. (1986).  Patterns in distribution and abundance of a noncoevolved assemblage of estuarine fishes in California. Fishery Bulletin. 84, 105-117.
Moyle, P. B., Kiernan J. D., Crain P. K., & Quiñones R. M. (2012).  Projected Effects of Future Climates on Freshwater Fishes of California. Our Changing Climate.
Moyle, P. B., & F Senanayake R. (1981).  Rainforest fishes of Sri Lanka. Loris . 15, 341-344.
Moyle, P. B. (2006).  Review of Freshwater Fishes of Mexico by Robert Rush Miller. (Miller, R. Rush, Ed.).Quarterly Review of Biology . 81,
Moyle, P. B. (1996).  Status of aquatic habitat types. Sierra Nevada Ecosystem Project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 945-952.
Moyle, P. B., & Massingill M. (1981).  Hybridization between hitch, Lavinia exilicauda, and Sacramento blackfish, Orthodon microlepidotus, in San Luis Reservoir, California. California Fish and Game. 67, 196-198.
Moyle, P. B., Katz J. V. E., & Quiñones R. M. (2011).  Rapid decline of California's native inland fishes: a status assessment.