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Journal Article
Lund, J. R., & Moyle P. B. (2013).  Adaptive Management and Science for the Delta Ecosystem. San Francisco Estuary and Watershed Science. 11(3), 
Marchetti, M. P., Moyle P. B., & Levine R. (2004).  Alien Fishes in California Watersheds: Characteristics of Successful and Failed Invaders. Ecological Applications. 14(2), 587-596.
Moyle, P. B., Crain P. K., Whitener K., & Mount JF. (2003).  Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.
Moyle, P. B. (2000).  Aliens in fresh water. Review of R. Claudi and J. H. Leach, eds. 2000. Non-indigenous freshwater organisms: vectors, biology, and impacts. . Ecology . 81, 2945-2946.
Stanley, S. E., Moyle P. B., & H. Shaffer B. (1995).  Allozyme Analysis of Delta Smelt, Hypomesus transpacificus and Longfin Smelt, Spirinchus thaleichthys in the Sacramento-San Joaquin Estuary, California. Copeia. 1995(2), 390-396.
Jr, J. J. Cech, & Moyle P. B. (1983).  ALTERNATIVE FISH SPECIES AS PREDATORS FOR RICE FIELD MOSQUITOS IN CALIFORNIA'. Bulletin of the Society of Vector Ecologists. 8(2), 107–110.
Moyle, P. B. (1984).  America's carp. Natural History. 93(9), 42-51.
Schroeter, RE., O'Rear T., Young M., & Moyle P. B. (2015).  The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3), 
Moyle, P. B. (1977).  Are coarse fish a curse? . Fly Fisherman, Early Season . 8, 35-39.
R. Geary, E., & Moyle P. B. (1980).  Aspects of the Ecology of the Hitch, Lavinia exilicauda (Cyprinidae), a Persistent Native Cyprinid in Clear Lake, California. The Southwestern Naturalist. 25(3), 385-390.
Broadway, J. E., & Moyle P. B. (1978).  Aspects of the ecology of the prickly sculpin,Cottus asper Richardson, a persistent native species in Clear Lake, Lake County, California. Environmental Biology of Fishes. 3(4), 337-343.
Light, T., Moyle P. B., & J Clode C. (2015).  Assembly rules and novel assemblages in aquatic ecosystems. Biological Invasions in Changing Ecosystems Vectors, Ecological Impacts, Management and Predictions.
Baumsteiger, J., & Moyle P. B. (2017).  Assessing Extinction. Bioscience. 67,
Moyle, P. B. (1991).  Ballast water introductions. Fisheries. 16, 4–6.
Trenham, P. C., H. Shaffer B., & Moyle P. B. (1998).  Biochemical Identification and Assessment of Population Subdivision in Morphologically Similar Native and Invading Smelt Species (Hypomesus) in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society. 127(3), 417-424.
Moyle, P. B., & Williams J. E. (1990).  Biodiversity Loss in the Temperate Zone: Decline of the Native Fish Fauna of California. Conservation Biology. 4(3), pp. 275-284.
Moyle, P. B., & Light T. (1996).  Biological invasions of fresh water: Empirical rules and assembly theory. Biological Conservation. 78(1-2), 149 - 161.
Lodge, D. M., Williams S., Isaac H. J. Mac, Hayes K. R., Leung B., Reichard S., et al. (2006).  Biological Invasions: Recommendations for U.S. Policy and Management. Ecological Applications. 16(6), 2035-2054.
Moyle, P. B., Baxter R. D., Sommer T., Foin T. C., & Matern S. A. (2004).  Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science. 2(2), 1-47.
Daniels, R. A., & Moyle P. B. (1978).  Biology, Distribution and Status of Cottus asperrimus in the Pit River Drainage, Northeastern California. Copeia. 1978(4), 673-679.
Crain, P. K., & Moyle P. B. (2011).  Biology, History, Status, and Conservation of Sacramento Perch, Archoplites interruptus: A Review . San Francisco Estuary and Watershed Science. 9(1), 
Sturgess, J. A., & Moyle P. B. (1978).  Biology of rainbow trout (Salmo gairdneri), brown trout (S. trutta), and interior Dolly Varden (Salvelinus confluentus) in the McCloud River, California, in relation to management. Cal-Neva Wildlife . 1978, 239-250.
Moyle, P. B., & Marciochi A. (1975).  Biology of the Modoc Sucker, Catostomus microps, in Northeastern California. Copeia. 1975(3), 556-560.
Power, M. E., R. Stout J., Cushing C. E., Harper P. P., F. Hauer R., Matthews W. J., et al. (1988).  Biotic and Abiotic Controls in River and Stream Communities. Journal of the North American Benthological Society. 7(4), 456-479.
Carmona-Catot, G., Moyle P. B., Aparicio E., Crain P. K., Thompson L. C., & García-Berthou E. (2010).  Brook Trout Removal as a Conservation Tool to Restore Eagle Lake Rainbow Trout. North American Journal of Fisheries Management. 30(5), 1315-1323.
Quiñones, R. M., & Moyle P. B. (2015).  California’s freshwater fishes: status and management. FISHMED Fishes in Mediterranean Environments. 20p.PDF icon Complete study (1.46 MB)
Sommer, T., Harrell B., Nobriga M., Brown R. L., Moyle P. B., Kimmerer W., et al. (2001).  California's Yolo Bypass: Evidence that flood control Can Be compatible with fisheries, wetlands, wildlife, and agriculture. Fisheries. 26(8), 6-16.
Marchetti, M. P., & Moyle P. B. (1995).  The case of Putah Creek: Conflicting values complicate stream protection. California Agriculture. 49(6), 73–78.
Marchetti, M. P., & Moyle P. B. (1995).  The case of Putah Creek: Conflicting values complicate stream protection. California Agriculture. 49(6), 73-78.PDF icon Putah Creek CA Agriculture.pdf (1.1 MB)
Meng, L., Moyle P. B., & Herbold B. (1994).  Changes in Abundance and Distribution of Native and Introduced Fishes of Suisun Marsh. Transactions of the American Fisheries Society. 123(4), 498-507.
Eagles-Smith, C. A., Suchanek T. H., Colwell A. E., Anderson N. L., & Moyle P. B. (2008).  Changes in fish diets and mercury accumulation in Clear Lake, California: effects of an invasive planktivorous fish. Ecological Applications. 18(8 Supplement), A213-A226.
Brown, L. R., & Moyle P. B. (1991).  Changes in Habitat and Microhabitat Partitioning within an Assemblage of Stream Fishes in Response to Predation by Sacramento Squawfish (Ptychocheilus grandis). Canadian Journal of Fisheries and Aquatic Sciences. 48(5), 849-856.
Yoshiyama, R. M., Moyle P. B., Gerstung E. R., & Fisher F. W. (2000).  Chinook Salmon in the California Central Valley: An Assessment. Fisheries. 25(2), 6-20.
Quiñones, R. M., & Moyle P. B. (2014).  Climate change vulnerability of freshwater fishes in the San Francisco Bay Area. San Francisco Estuary and Watershed Science. 12(3), PDF icon Quinones and Moyle 2014 cc in SFBA.pdf (324.79 KB)
Moyle, P. B., Kiernan J. D., Crain P. K., & Quiñones R. M. (2013).  Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach. PDF icon Moyle et al 2013 fw fishes cc Plos One.pdf (734.37 KB)
Moyle, P. B. (2013).  Climate Change Vulnerability of Native and Alien Freshwater Fishes of California: A Systematic Assessment Approach . (Kiernan, J. D., Crain P. K., & Quiñones R. M., Ed.).PLoS ONE. PDF icon journal.pone_.0063883.pdf (734.37 KB)
Adams, P. B., Botsford L. W., Gobalet K. W., Leidy R. A., McEwan D. R., Moyle P. B., et al. (2007).  Coho Salmon are Native South of San Francisco Bay: A Reexamination of North American Coho Salmon's Southern Range Limit. Fisheries. 32(9), 441-451.
Baird, I., Hogan Z., Phylaivanh B., & Moyle P. B. (2001).  A Communal Fishery for the Migratory Catfish Pangasius macronemain the Mekong River. Asian Fisheries Science. 14, 25–41.
Moyle, P. B. (1969).  Comparative Behavior of Young Brook Trout of Domestic and Wild Origin. The Progressive Fish-Culturist. 31(1), 51-56.
Brown, L. R., Matern S. A., & Moyle P. B. (1995).  Comparative ecology of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River, California. Environmental Biology of Fishes. 42(4), 329-343.
Baltz, D. M., Moyle P. B., & Knight N. J. (1982).  Competitive Interactions Between Benthic Stream Fishes, Riffle Sculpin, Cottus gulosus, and Speckled Dace, Rhinichthys osculus. Canadian Journal of Fisheries and Aquatic Sciences. 39(11), 1502-1511.
Opperman, J.J., & Moyle P. B. (2005).  A conceptual model for floodplain restoration. Flood Management Association News . 15(4), 7-10.
Kopf, R.K., Nimmo D.G., Humphries P., Baumsteiger J., Bode M., Bond N.R., et al. (2017).  Confronting the risks of large-scale invasive species control. Nature Ecology & Evolution. 1,
F Senanayake, R., & Moyle P. B. (1982).  Conservation of freshwater fishes of Sri Lanka. Biological Conservation. 22(3), 181 - 195.
Moyle, P. B. (1995).  Conservation of native freshwater fishes in the Mediterranean-type climate of California, USA: A review. Biological Conservation. 72(2), 271 - 279.
Moyle, P. B., & F Senanayake R. (1981).  Conservation of ornamental freshwater fishes in Sri Lanka.. Tigerpaper. 8, 1-3.
Moyle, P. B., & Ellison J. P. (1991).  A conservation-oriented classification system for the inland waters of California. California Fish and Game. 77, 161-180.
Medellín-Azuara, J., Durand J. R., Fleenor W. E., Hanak E., Lund J. R., Moyle P. B., et al. (2013).  Costs of Ecosystem Management Actions for the Sacramento-San Joaquin Delta.
Courteney, WR., & Moyle P. B. (1992).  Crimes against biodiversity: the lasting legacy of fish introductions. Transactions of the 57th North American Wildlife and Natural Resource Conference. 57, 365-372.
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. PDF icon Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California (655.17 KB)