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Uncertainty and instream flow standards. Fisheries. 21(8), 20–21.(1996).
Where have all the fishes gone: interactive factors producing fish declines in the Sacramento-San Joaquin estuary. (Hollibaugh, J. T., Ed.).San Francisco Bay: the Ecosystem. 519-542.(1996).
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The importance of an historical perspective: Fish introductions.. Fisheries. 22(10), 14.(1997).
Invading species in the Eel River, California: successes, failures, and relationships with resident species. Environmental Biology of Fishes. 49(3), 271-291.(1997).
The role of adaptive management in restoring chinook salmon to the Tuolumne River. (Wang, S. S. Y., & Carstens T., Ed.).Environmental and Coastal Hydraulics: Protecting the Aquatic Habitat. 557-562.(1997).
Biochemical Identification and Assessment of Population Subdivision in Morphologically Similar Native and Invading Smelt Species (Hypomesus) in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society. 127(3), 417-424.(1998).
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Evaluating the Biotic Integrity of Watersheds in the Sierra Nevada, California. Conservation Biology. 12(6), 1318–1326.(1998).
Fish Health and Diversity: Justifying Flows for a California Stream. Fisheries. 23(7), 6-15.(1998).
Fish health and diversity: Justifying flows for a California stream. Fisheries. 23(7), 6-15.(1998).
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Restoring aquatic ecosystems is a matter of values. California Agriculture. 54(2), 16–25.(2000).
Spatial and Temporal Ecology of Native and Introduced Fish Larvae in Lower Putah Creek, California. Environmental Biology of Fishes. 58(1), 75-87.(2000).
California's Yolo Bypass: Evidence that flood control Can Be compatible with fisheries, wetlands, wildlife, and agriculture. Fisheries. 26(8), 6-16.(2001).
A Communal Fishery for the Migratory Catfish Pangasius macronemain the Mekong River. Asian Fisheries Science. 14, 25–41.(2001).
Effects of Flow Regime on Fish Assemblages in a Regulated California Stream. Ecological Applications. 11(2), 530-539.(2001).
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Native and Alien Fishes in a California Estuarine Marsh: Twenty-One Years of Changing Assemblages. Transactions of the American Fisheries Society. 131(5), 797-816.(2002).
Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.(2003).
Dietary shifts in a stressed fish assemblage: Consequences of a bivalve invasion in the San Francisco Estuary. Environmental Biology of Fishes. 67(3), 277-288.(2003).
Eagle Lake rainbow trout: survivors in a troubled habitat. Streamkeepers Log . 104,(2003).
Goose Lake redband trout: high desert survivors. Streamkeepers Log . 103,(2003).
Review of Candiru: life and legend of bloodsucking catfishes by Stephen Spotte. Fisheries . 28(1),(2003).
Alien Fishes in California Watersheds: Characteristics of Successful and Failed Invaders. Ecological Applications. 14(2), 587-596.(2004).
Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science. 2(2), 1-47.(2004).
Endangered and Threatened Fishes in the Klamath River Basin: Causes of Decline and Strategies for Recovery. 334.(2004).
Fish Invasions in California Watersheds: Testing Hypotheses Using Landscape Patterns. Ecological Applications. 14(5), 1507-1525.(2004).
The Imperiled Giants of the Mekong: Ecologists struggle to understand—and protect—Southeat Asia's large migratory catfish. American Scientist. 92(3), 228-237.(2004).
Invasive species profiling? Exploring the characteristics of non-native fishes across invasion stages in California. Freshwater Biology. 49(5), 646–661.(2004).
Review of Snakehead: fish out of water by Jay Dolan. CoCopeia . 710-711.(2004).