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Untested assumptions: Effectiveness of Screening Diversions for Conservation of Fish Populations. Fisheries. 30(5), 20-28.(2005).
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Biological Invasions: Recommendations for U.S. Policy and Management. Ecological Applications. 16(6), 2035-2054.(2006).
Making a precarious perch more secure: Central Valley farm ponds for native fish conservation. Sustainable Agriculture . 18(3),(2006).
Managing Fire-Prone Forests in the Western United States. Frontiers in Ecology and the Environment. 4(9), pp. 481-487.(2006).
Predicting Invasion Success: Freshwater Fishes in California as a Model. BioScience. 56(6), 515-524.(2006).
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Baseline Assessment of Salmonid Habitat and Aquatic Ecology of the Nelson Ranch, Shasta River, California Water Year 2007.(2007).
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Homogenous rivers, homogenous faunas. Proceedings of the National Academy of Sciences. 104(14), 5711-5712.(2007).
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An expert survey on the viability of delta fish populations. Technical Appendix E to Comparing Futures for the Sacramento–San Joaquin Delta. 29.(2008).
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Projecting Cumulative Benefits of Multiple River Restoration Projects: An Example from the Sacramento-San Joaquin River System in California. Environmental Management. 42(6), 933-945.(2008).
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Baseline Assessment of Physical and Biological Conditions Within Waterways on Big Springs Ranch, Siskiyou County, California.(2009).
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Quantifying activated floodplains on a lowland regulated river: its application to floodplain restoration in the Sacramento Valley. San Francisco Estuary and Watershed Science. 7(1),(2009).