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Journal Article
Kiernan, J. D., & Moyle P. B. (2012).  Flows, droughts, and aliens: factors affecting the fish assemblage in a Sierra Nevada, California, stream. Ecological Applications. 22(4), pp. 1146-1161.
Young, M., Howe E., O'Rear T., Berridge K., & Moyle P. (2020).  Food Web Fuel Differs Across Habitats and Seasons of a Tidal Freshwater Estuary. Estuaries and Coasts. 188,
Howard, J. K., Fesenmyer K., Grantham T. E., Viers J. H., Ode P., Moyle P. B., et al. (2018).  A Freshwater Conservation Blueprint for California: Prioritizing Watersheds for Freshwater Biodiversity. Freshwater Science. 37(2), 
Moyle, P. B. (2008).  The Future of Fish in Response to Large-Scale Change in the San Francisco Estuary, California. American Fisheries Society Symposium. 64,
Moyle, P. B., Manfree A. D., & Fiedler P. L. (2013).  The Future of Suisun Marsh as Mitigation Habitat. San Francisco Estuary and Watershed Science. 11(3), 
Baumsteiger, J., Moyle P. B., S.A. A., O'Rourke S. M., & Miller M. R. (2017).  Genomics Clarifies Taxonomic Boundaries in a Difficult Species Complex.. PLoS ONE. 12(12), 
Daniels, R. A., & Moyle P. B. (1984).  Geographic Variation and a Taxonomic Reappraisal of the Marbled Sculpin, Cottus klamathensis. Copeia. 1984(4), 949-959.
Moyle, P. B. (2003).  Goose Lake redband trout: high desert survivors. Streamkeepers Log . 103,
Young, M., Berridge K., O'Rear T., Moyle P. B., & Durand J. R. (2017).  Habitat partitioning by native and non-native fishes and decapods in novel habitats of the upper San Francisco Estuary. Biological Invasions.
Moyle, P. B., Lund J. R., Bennett W. A., & Fleenor W. E. (2010).  Habitat Variability and Complexity in the Upper San Francisco Estuary. San Francisco Estuary and Watershed Science. 8(3), 
Quiñones, R. M., Johnson M. L., & Moyle P. B. (2014).  Hatchery practices may result in replacement of wild salmonids: adult trends in the Klamath basin, California. Environmental biology of fishes. 97, 233–246.
Baxa, D. V., Stover A., Clifford M., Kurobe T., Teh S. J., Moyle P. B., et al. (2013).  Henneguya sp. in yellowfin goby Acanthogobius flavimanus from the San Francisco Estuary. SpringerPlus. 2, 420.
Yoshiyama, R. M., Fisher F. W., & Moyle P. B. (1998).  Historical Abundance and Decline of Chinook Salmon in the Central Valley Region of California. North American Journal of Fisheries Management. 18(3), 487-521.
Moyle, P. B., & Mount JF. (2007).  Homogenous rivers, homogenous faunas. Proceedings of the National Academy of Sciences. 104(14), 5711-5712.
Moyle, P. B., & Massingill M. (1981).  Hybridization between hitch, Lavinia exilicauda, and Sacramento blackfish, Orthodon microlepidotus, in San Luis Reservoir, California. California Fish and Game. 67, 196-198.
Brown, L. R., & Moyle P. B. (1981).  The Impact of Squawfish on Salmonid Populations: A Review. North American Journal of Fisheries Management. 1(2), 104-111.
Parker, I.M., Simberloff D., Lonsdale W.M., Goodell K., Wonham M., Kareiva P.M., et al. (1999).  Impact: Toward a Framework for Understanding the Ecological Effects of Invaders. Biological Invasions. 1(1), 3-19.
Katz, J. V. E., Moyle P. B., Quiñones R. M., Israel J. A., & Purdy S. (2012).  Impending extinction of salmon, steelhead, and trout (Salmonidae) in California. Environmental Biology of Fishes.
Katz, J. V. E., Moyle P. B., Quiñones R. M., Israel J. A., & Purdy S. (2013).  Impending extinction of salmon, steelhead, and trout (Salmonidae) in California. Environmental Biology of Fishes. 96, 1169-1186.PDF icon Katz_et_al._2013 salmonids in CA.pdf (517.46 KB)
Hogan, Z. S., Moyle P. B., May B., M. Zanden J. Vander, & Baird I. G. (2004).  The Imperiled Giants of the Mekong: Ecologists struggle to understand—and protect—Southeat Asia's large migratory catfish. American Scientist. 92(3), 228-237.
Brown, L. R., Moyle P. B., Bennett W. A., & Quelvog B. D. (1992).  Implications of morphological variation among populations of California roach Lavinia symmetricus (Cyprinidae) for conservation policy. Biological Conservation. 62(1), 1 - 10.
Moyle, P. B. (1997).  The importance of an historical perspective: Fish introductions.. Fisheries. 22(10), 14.
Moyle, P. B. (1977).  In defense of sculpins. Fisheries . 2(1), 20-23.
Baltz, D. M., Vondracek B., Brown L. R., & Moyle P. B. (1987).  Influence of Temperature on Microhabitat Choice by Fishes in a California Stream. Transactions of the American Fisheries Society. 116(1), 12-20.
Strange, E. M., Moyle P. B., & Foin T. C. (1993).  Interactions between stochastic and deterministic processes in stream fish community assembly. Environmental Biology of Fishes. 36(1), 1-15.
Herbold, B., & Moyle P. B. (1986).  Introduced Species and Vacant Niches. The American Naturalist. 128(5), 751-760.
Moyle, P. B., & Moyle M. A. (1991).  Introduction to fish imagery in art. Environmental Biology of Fishes. 31(1), 5-23.
Brown, L. R., & Moyle P. B. (1997).  Invading species in the Eel River, California: successes, failures, and relationships with resident species. Environmental Biology of Fishes. 49(3), 271-291.
Baltz, D. M., & Moyle P. B. (1993).  Invasion Resistance to Introduced Species by a Native Assemblage of California Stream Fishes. Ecological Applications. 3(2), 246-255.
Marchetti, M. P., Moyle P. B., & Levine R. (2004).  Invasive species profiling? Exploring the characteristics of non-native fishes across invasion stages in California. Freshwater Biology. 49(5), 646–661.
Wintzer, A. P., Meek M. H., & Moyle P. B. (2011).  Life history and population dynamics of Moerisia sp., a non-native hydrozoan, in the upper San Francisco Estuary (U.S.A.). Estuarine, Coastal and Shelf Science. 94(1), 48 - 55.
Moyle, P. B., Herbold B., Stevens D. E., & Miller L. W. (1992).  Life History and Status of Delta Smelt in the Sacramento-San Joaquin Estuary, California. Transactions of the American Fisheries Society. 121(1), 67-77.
Baltz, D. M., & Moyle P. B. (1982).  Life history characteristics of tule perch (Hysterocarpus traski) populations in contrasting environments. Environmental Biology of Fishes. 7(3), 229-242.
Daniels, R. A., & Moyle P. B. (1983).  Life history of splittail (Cyprinidae: Pogonichthys macrolepidotus) in the Sacramento-San Joaquin Estuary. Fishery bulletin United States. 81, 647-654.
Ribeiro, F., Elvira B., Collares-Pereira M. João, & Moyle P. B. (2008).  Life-history traits of non-native fishes in Iberian watersheds across several invasion stages: a first approach. Biological Invasions. 10(1), 89-102.
Moyle, P. B., & Davis L. H. (2001).  A list of freshwater, anadromous, and euryhaline fishes of California. California Fish and Game. 86(4), 244–258.
Moyle, P. B. (1991).  Livebearing fish in evolutionary research. Review of G. K. Meffe and F. F. Snelson (Editors), Ecology and Evolution of Livebearing Fishes (Poeciliidae). Prentice Hall, Englewood Cliffs, New Jersey. Evolution. 45, 453pp.
O'Rear, T., & Moyle P. B. (2010).  Long term and recent trends in fishes and invertebrates in Suisun Marsh. Interagency Ecological Program Newsletter. 23(2), 
Carmona-Catot, G., Moyle P. B., & Simmons R. E. (2012).  Long-term captive breeding does not necessarily prevent reestablishment: lessons learned from Eagle Lake rainbow trout. Reviews in Fish Biology and Fisheries. 22(1), 325-342.
Baumsteiger, J., Schroeter R., O'Rear T., Cook J., & Moyle P. B. (2017).  Long-term surveys show invasive overbite clams (Potamocorbula amurensis) are spatially limited in Suisun Marsh. San Francisco Estuary and Watershed Science. 15(1), 
Bugg, RL., & Moyle P. B. (2006).  Making a precarious perch more secure: Central Valley farm ponds for native fish conservation. Sustainable Agriculture . 18(3), 
Mount, JF., Gray B., Chappelle C., Gartrell G., Grantham T. E., Moyle P. B., et al. (2017).  Managing California's Freshwater Ecosystems: Lessons from the 2012-16 Drought.. Public Policy Institute of California.
Noss, R. F., Franklin J. F., Baker W. L., Schoennagel T., & Moyle P. B. (2006).  Managing Fire-Prone Forests in the Western United States. Frontiers in Ecology and the Environment. 4(9), pp. 481-487.
Herbold, B. (2018).  Managing for salmon resilience in California’s variable and changing climate. (Carlson, SM., Henery R., Johnson RC., Mantua N., Moyle P. B., & Sommer T., Ed.).San Francisco Estuary and Watershed Sciences. 16(2), PDF icon SFEWS_Herbold_0818_final.pdf (6.85 MB)
Bunn, D. A., Moyle P. B., & Johnson C. K. (2014).  Maximizing the ecological contribution of conservation banks. Wildlife Society Bulletin. 38(2), 377–385.
Moyle, P. B., & Baltz D. M. (1985).  Microhabitat Use by an Assemblage of California Stream Fishes: Developing Criteria for Instream Flow Determinations. Transactions of the American Fisheries Society. 114(5), 695-704.
Moyle, P. B., Fisher FW., & Li HW. (1974).  Mississippi Silversides and Logperch In Sacramento San-Joaquin River System. California Fish and Game . 60, 144-149.
Liu, J-X., Tatarenkov A., O’Rear T. A., Moyle P. B., & Avise J. C. (2012).  Molecular Evidence for Multiple Paternity in a Population of the Viviparous Tule Perch Hysterocarpus traski. Journal of Heredity. 104(2), 217-222.
Liu, J-X., Taternkov A., O'Rear T., Moyle P. B., & Avise J. (2013).  Molecular evidence for multiple paternity in a population of the viviparous tule perch, Hysterocarpus traski. Journal of Heredity. 104(2), 
Purdy, S. E., Moyle P. B., & Tate K. W. (2012).  Montane meadows in the Sierra Nevada: comparing terrestrial and aquatic assessment methods. Environmental Monitoring and Assessment. 184(11), 6967-6986.