A list of freshwater, anadromous, and euryhaline fishes of California. California Fish and Game. 86(4), 244–258.(2001).
Native and Alien Fishes in a California Estuarine Marsh: Twenty-One Years of Changing Assemblages. Transactions of the American Fisheries Society. 131(5), 797-816.(2002).
Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.(2003).
Dietary shifts in a stressed fish assemblage: Consequences of a bivalve invasion in the San Francisco Estuary. Environmental Biology of Fishes. 67(3), 277-288.(2003).
Eagle Lake rainbow trout: survivors in a troubled habitat. Streamkeepers Log . 104,(2003).
Goose Lake redband trout: high desert survivors. Streamkeepers Log . 103,(2003).
Review of Candiru: life and legend of bloodsucking catfishes by Stephen Spotte. Fisheries . 28(1),(2003).
Alien Fishes in California Watersheds: Characteristics of Successful and Failed Invaders. Ecological Applications. 14(2), 587-596.(2004).
Application of a Simulation-Optimization Approach for Water Supply Wellfield Management and Plume Containment.(2004).
Biology and Population Dynamics of Sacramento Splittail (Pogonichthys macrolepidotus) in the San Francisco Estuary: A Review. San Francisco Estuary and Watershed Science. 2(2), 1-47.(2004).
Endangered and Threatened Fishes in the Klamath River Basin: Causes of Decline and Strategies for Recovery. 334.(2004).
Fish Invasions in California Watersheds: Testing Hypotheses Using Landscape Patterns. Ecological Applications. 14(5), 1507-1525.(2004).
The geomorphic dynamics of an upper deltaic floodplain tract in the Sacramento-San Joaquin Delta, California, USA. Earth Surface Processes and Landforms. 29,(2004).
The Imperiled Giants of the Mekong: Ecologists struggle to understand—and protect—Southeat Asia's large migratory catfish. American Scientist. 92(3), 228-237.(2004).
Invasive species profiling? Exploring the characteristics of non-native fishes across invasion stages in California. Freshwater Biology. 49(5), 646–661.(2004).
Managing Surface Water-Groundwater to Restore Fall Flows in the Cosumnes River. ASCE Journal of Water Resources Planning and Management. 130(4),(2004).
Review of Snakehead: fish out of water by Jay Dolan. CoCopeia . 710-711.(2004).
Simulated changes in shallow groundwater and vegetation distributions under different reservoir operations scenarios.. Ecological Applications. 14, 192-207.(2004).
Summary of data and analyses indicating that exotic species have impaired the beneficial uses of certain California waters.(2004).
Use of a restored central California floodplain by larvae of native and alien fishes. Early Life History of Fishes in the San Francisco Estuary and Watershed. 125-140.(2004).
Alien fishes in California’s marine environments. (Allen, L. G., & Horn M. H., Ed.).Ecology of California marine fishes. . 611–620.(2005).
The application of an economic-engineering optimization model for water management in Ensenada, Baja California, Mexico. IWA's 5th International Symposium on Wastewater Reclamation and Reuse for Sustainability.(2005).
A conceptual model for floodplain restoration. Flood Management Association News . 15(4), 7-10.(2005).
Critical assessment of the delta smelt population in the San Francisco Estuary, California. San Francisco Estuary and Watershed Science. 3(2),(2005).
Delta Levee Vulnerability Study. San Francisco Estuary and Watershed Science. 3(1),(2005).
Native Fishes of the Sacramento-San Joaquin Drainage, California: A History of Decline. (Rinne, J. N., Hughes R. M., & Calamusso B., Ed.).Historical Changes in Large River Fish Assemblages of the Americas. 45, 75-98.(2005).
Natural and anthropogenic geochemical signatures of floodplain and deltaic sedimentary strata, Sacramento Delta, CA. Environmental Pollution. 141(2),(2005).
The role of perched aquifers in hydrological connectivity and biogeochemical processes in vernal pool landscapes, Central Valley, California. Hydrological Processes. 20, 1157–1175.(2005).
Subsidence, sea level rise, and seismicity in the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 3(1),(2005).
Systems Analysis for Restoring the Colorado River Delta in Mexico. Graduate Student Symposium.(2005).
Systems Analysis for Restoring the Lower Colorado River Delta. 2005 International Law Conference: Freshwater Ecosystem Restoration: The Role of Law Process and Lawyers.(2005).
Untested assumptions: Effectiveness of Screening Diversions for Conservation of Fish Populations. Fisheries. 30(5), 20-28.(2005).
Validation of Sr isotopes in otoliths by laser ablation multicollector inductively coupled plasma mass spectrometry (LA-MC-ICPMS): opening avenues in fisheries science applications. Canadian Journal of Fisheries and Aquatic Sciences. 62,(2005).
Variability in Length-Weight Relationships Used to Estimate Biomass of Estuarine Fish from Survey Data. Transactions of the American Fisheries Society. 134(2), 481-495.(2005).
Water Quality Modeling and Monitoring in the California North Delta Area. Civil and Environmental Engineering . Master of Science,(2005).
Analisis Economico-Ingenieril de Uso Eficiente de Agua en Baja California, Coloquio Sobre Disponibilidad y Abastecimiento de Agua en Nuestra Region. Comision Estatal de Servicios Publicos de Tijuana.(2006).
Biological Invasions: Recommendations for U.S. Policy and Management. Ecological Applications. 16(6), 2035-2054.(2006).
Climate Change and Water Supply Adaptation in California 2050. Universities Council on Water Resources Conference on Increasing Freshwater Supplies.(2006).
Economia, poblacion y eficiencia para el abastecimiento futuro de agua potable en Baja California. (Mungaray-Lagarda, A., & Ocegueda J. Manuel, Ed.).Estudios Economicos sobre Baja California. 199.(2006).
Economic-Engineering Optimization for the Binational Mexico-Us Lower Colorado River Delta: The Mexicali Valley Case Study. Universities Council on Water Resources Conference on Increasing Freshwater Supplies.(2006).
Economic-engineering optimization modeling for water management in Ensenada, Baja California, Mexico. IWA's 5th World Water Congress.(2006).