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Howitt, R., & Medellín-Azuara J. (2010).  Estimating the Economic Impacts of Climate Change on California Agriculture. California Water and Environmental Modeling Forum.
Howitt, R., Lund J. R., & Medellín-Azuara J. (2008).  Modeling Economic Costs to agriculture of Changes in the Delta Export Salinity. California Water and Environmental Modeling Forum.
Howitt, R., Lund J. R., Medellín-Azuara J., MacEwan D., & Garnache C. (2012).  Yolo Bypass and Floodplains: Land Use and Economic Value. Flood Risk Assessment Group.
Howitt, R., & Medellín-Azuara J. (2010).  Improved agricultural water use modeling in California using remote sensing. Bay-Delta Science Conference 2010.
Howitt, R., Medellín-Azuara J., MacEwan D., Lund J. R., & Sumner D. (2014).  Economic Impacts of 2014 Drought on California Agriculture by Region. PDF icon Economic_Impacts_2014_CA_Drought_By_Region.pdf (245.3 KB)
Howitt, R., Medellín-Azuara J., Lund J. R., & MacEwan D. (2014).  Preliminary 2014 Drought Economic Impact Estimates in Central Valley Agriculture. 1- 6 pp.PDF icon Preliminary_2014_drought_economic_impacts-05192014.pdf (211.43 KB)
Howitt, R., Medellín-Azuara J., & MacEwan D. (2008).  Measuring economic impact of agricultural yield related changes.
Howitt, R., MacEwan D., Medellín-Azuara J., & Lund J. R. (2010).  Economic Modeling of Agriculture and Water in California Using the Statewide Agricultural Production Model. A Report for the California Department of Water Resources.
Howitt, R., MacEwan D., Medellín-Azuara J., Lund J. R., & Sumner D. (2015).  Economic Analysis of the 2015 Drought for California Agriculture. 16pp.PDF icon Executive summary (84.48 KB)PDF icon Main report (360.3 KB)PDF icon Full report with appendices (949.8 KB)PDF icon Technical appendices (371.5 KB)
Howitt, R., Kaplan J., Larson D., MacEwan D., Medellín-Azuara J., Horner G., et al. (2008).  Central Valley Salinity Report.
Howitt, R., MacEwan D., Garnache C., Medellín-Azuara J., Marchand P., & Brown D. (2013).  Yolo Bypass Flood Date and Flow Volume Agricultural Impact Analysis. 60.
Hui, R., Jachens E., & Lund J. R. (2016).  Risk-Based Planning Analysis for A Single Levee. Water Resources Research. 52(4), PDF icon Risk-based planning analysis for a single levee.pdf (1.44 MB)
Hui, R., & Lund J. R. (2014).  Flood Storage Allocation Rules for Parallel Reservoirs.. Journal of Water Resources Planning and Management. 141(5), PDF icon Flood Storage Allocation Rules for Parallel Reservoirs.pdf (3.85 MB)
Hui, R., Lund J. R., Zhao J., & Zhao T. (2016).  Optimal Flood Pre-releases—Flood Hedging for A Single Reservoir. Water Resources Management. 30(5113), PDF icon Optimal Pre-storm Flood Hedging Releases for a Single Reservoir.pdf (8.71 MB)
Hui, R., Lund J. R., & Madani K. (2016).  Game Theory and Risk-Based Leveed River System Planning: The Cost of Non-cooperation. Water Resources Research. 51(2), PDF icon Game theory and risk based levee system planning with noncooperation.pdf (1.34 MB)
Jeffres, C., Opperman J.J., & Moyle P. B. (2008).  Ephemeral floodplain habitats provide best growth conditions for juvenile Chinook salmon in a California river. Environmental Biology of Fishes. 83(4), 
Jeffres, C., Mount JF., Moyle P. B., Deas M., Buckland E., Hammock B., et al. (2007).  Baseline Assessment of Salmonid Habitat and Aquatic Ecology of the Nelson Ranch, Shasta River, California Water Year 2007. PDF icon Read full report (1.9 MB)
Jeffres, C., Dahlgren R. A., Kiernan J. D., King A. M., Lusardi R. A., Nichols A., et al. (2009).  Baseline Assessment of Physical and Biological Conditions Within Waterways on Big Springs Ranch, Siskiyou County, California. PDF icon Read full study (9.11 MB)
Jeffres, C. A., & Adams C. (2019).  Novel life history tactic observed in fall-run Chinook Salmon. Ecology. 100(10), 
Jeffres, C., Nichols A., Willis A., Mount JF., Moyle P. B., & Deas M. (2010).  Assessment of Restoration Actions on Big Springs Creek, Shasta River, California 2009-2010.
Jeffres, C. A., A Klimley P., Merz J. E., & Cech J. J. (2006).  Movement of Sacramento sucker, Catostomus occidentalis, and hitch, Lavinia exilicauda, during a spring release of water from Camanche Dam in the Mokelumne River, California. Environmental Biology of Fishes. 75, 365–373.
Jeffres, C., Holmes E., Sommer T., & Katz J. V. E. (2020).  Detrital food web contributes to aquatic ecosystem productivity and rapid salmon growth in a managed floodplain. PLoS. 15(9), PDF icon Jeffres et al. 2020.pdf (2.26 MB)
Jeffres, C., & Moyle P. B. (2012).  When Good Fish Make Bad Decisions: Coho Salmon in an Ecological Trap. North American Journal of Fisheries Management. 32, 87-92.
Jenkins, M. W., Medellín-Azuara J., & Lund J. R. (2007).  California urban water demands for year 2050.
Jensen, V. B., Darby J., Seidel C., & Gorman C. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 6 - Treatment of Nitrate in Drinking Water.
Jensen, GC., & Johnson RC. (1999).  Reinstatement and further description of Eualus subtilis Carvacho & Olsen, and comparison with E. lineatus Wicksten & Butler (Crustacea: Decapoda: Hippolytidae). Proceeding of the Biological Society of Washington. 112(1), 
Jett, S. C., & Moyle P. B. (1986).  The Exotic Origins of Fishes Depicted on Prehistoric Mimbres Pottery from New Mexico. American Antiquity. 51(4), 688-720.
Johnson, RC., Garza JC., MacFarlane RB., Phillis CC., Koch PL., Weber PK., et al. (2016).  Isotopes and genes reveal freshwater origins of Chinook salmon (Oncorhynchus tshawytscha) aggregations in California’s coastal ocean. Marine Ecology Progress Series. 548,
Johnson, RC., Weber PK., Wikert JD., Workman M., MacFarlane RB., Grove MJ., et al. (2012).  Managed metapopulations: Do salmon hatchery ‘sources’ lead to in-river ‘sinks’ in conservation?. PLos ONE. 7(2), PDF icon 2012_Johnson_plosone.pdf (418.82 KB)
Johnson, RC., Windell S., Brandes P., Conrad JL., Ferguson J., Goertler PAL., et al. (2017).  Science advancements key to increasing management value of life stage monitoring networks for endangered Sacramento River Winter run Chinook salmon in California. San Francisco Estuary and Watershed Science. 13(3), PDF icon Johnson_2017_SFEWS.pdf (3.55 MB)
Johnson, RC., Lindley TC., Spence BC., Boughton DA., Crozier LG., Mantua NJ., et al. (2016).  Central Valley Domain. (Williams, TH., Ed.).Viability assessment for Pacific salmon and steelhead listed under the Endangered Species Act: Southwest. NOAA Technical Memorandum NMFS-SWFSC-564, PDF icon NOAA-TM-NMFS-SWFSC-564.pdf (6.23 MB)
Jones, D. J. (1999).  Application of Mixed-Integer Programming for Flood Control in the Sacramento Valley: Insights & Limitations . Engineering. MS, 111.
Jones, C. A. (2013).  Application of Optimization Modeling to Examine the Benefits of Expanding the Sacramento River Watershed Bypass System. Civil and Environmental Engineering. MS, 81.
Jr, WR. Courtenay, & Moyle P. B. (1996).  Biodiversity, fishes, and the introduction paradigm. (Szaro, R. C., & Johnston D. W., Ed.).Biodiversity in Managed Landscapes. 239–252.
Jr, J. J. Cech, & Moyle P. B. (1983).  ALTERNATIVE FISH SPECIES AS PREDATORS FOR RICE FIELD MOSQUITOS IN CALIFORNIA'. Bulletin of the Society of Vector Ecologists. 8(2), 107–110.
Katz, J. V. E., Moyle P. B., Quiñones R. M., Israel J. A., & Purdy S. (2012).  Impending extinction of salmon, steelhead, and trout (Salmonidae) in California. Environmental Biology of Fishes.
Katz, J. V. E., Moyle P. B., Quiñones R. M., Israel J. A., & Purdy S. (2013).  Impending extinction of salmon, steelhead, and trout (Salmonidae) in California. Environmental Biology of Fishes. 96, 1169-1186.PDF icon Katz_et_al._2013 salmonids in CA.pdf (517.46 KB)
Katz, J. V. E., Jeffres C., Moyle P. B., Sommer T., Conrad L., & Kiernan J. D. (2012).  Experimental Agricultural Floodplain Pilot Study, 2011-2012. 15.PDF icon Agricultural Floodplain Pilot Study 2011-2012 (4.52 MB)
Katz, J., Jeffres C., Conrad L., Sommer T., Martinex J., Brumbaugh S., et al. (2017).  Floodplain farm fields provide novel rearing habitat for Chinook salmon. PLoS ONE. 12(6), 
Katz, J. V. E., Jeffres C., Conrad L., Sommer T., Corline N. J., Martinez J., et al. (2013).  Experimental Agricultural Floodplain Habitat Investigation at Knaggs Ranch on Yolo Bypass, 2012-2013. PDF icon Knaggs 2013 Preliminary Report (4.12 MB)
Katz, J. V. E. (2012).  Knaggs Ranch Experimental Agricultural Floodplain Pilot Study 2011-2012: Year One Review. PDF icon Knaggs Ag Floodplain 2012 Overview Final.pdf (4.47 MB)
Kershner, JL., Snider WM., Turner DM., & Moyle P. B. (1992).  Distribution and sequencing of mesohabitats: are there differences at the reach scale?. Rivers. 3, 179–190.
Kiernan, J. D., & Moyle P. B. (2012).  Flows, droughts, and aliens: factors affecting the fish assemblage in a Sierra Nevada, California, stream. Ecological Applications. 22(4), pp. 1146-1161.
Kiernan, J. D., Moyle P. B., & Crain P. K. (2012).  Restoring native fish assemblages to a regulated California stream using the natural flow regime concept. Ecological Applications. 22(5), 10.PDF icon Kiernan et al. 2012, Ecological Applications (560.77 KB)
Kimmerer, W., Avent S. R., Bollens S. M., Feyrer F., Grimaldo L. F., Moyle P. B., et al. (2005).  Variability in Length-Weight Relationships Used to Estimate Biomass of Estuarine Fish from Survey Data. Transactions of the American Fisheries Society. 134(2), 481-495.
Kimmerer, W., Brown L. R., Culberson S., Moyle P. B., Nobriga M., & Thompson J. (2008).  Aquatic ecosystems. (Healey, M., Dettinger M., & Norgaard R., Ed.).The State of Bay-Delta Science 2008. 55-72.
King, A. M., Jensen V. B., Fogg G., & Harter T. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 5 - Remediation of Groundwater Nitrate.
Kondolf, G. Matthias, Podolak K., & Grantham T. E. (2012).  Restoring mediterranean-climate rivers. Hydrobiologia. Online First,
Kondolf, G.M., Angermeier P. L., Cummins K., Dunne T., Healey M., Kimmerer W., et al. (2008).  Projecting Cumulative Benefits of Multiple River Restoration Projects: An Example from the Sacramento-San Joaquin River System in California. Environmental Management. 42(6), 933-945.
Kopf, R.K., Nimmo D.G., Humphries P., Baumsteiger J., Bode M., Bond N.R., et al. (2017).  Confronting the risks of large-scale invasive species control. Nature Ecology & Evolution. 1,