Publications
(2010).
Biology, management, and conservation of lampreys in North America.
American Fisheries Society Symposium . 72, 321.
(2010). Brook Trout Removal as a Conservation Tool to Restore Eagle Lake Rainbow Trout.
North American Journal of Fisheries Management. 30(5), 1315-1323.
(2010).
(2010). Comparing Futures for the Sacramento-San Joaquin Delta.
Freshwater ecology series. 230.
(2010). Comparing Futures for the Sacramento-San Joaquin Delta.
Freshwater Ecology Series. 3, 231.
(2010). On developing prescriptions for freshwater flows to sustain desirable fishes in the Sacramento-San Joaquin Delta.
46.
Fish_Flows_for_the_Delta_15feb2010.pdf (772.13 KB)
(2010).
(2010). 
Ecological insights into the polyp stage of non-native hydrozoans in the San Francisco Estuary.
Aquatic Ecology. 45(2), 151-161.
(2010). Habitat Variability and Complexity in the Upper San Francisco Estuary.
San Francisco Estuary and Watershed Science. 8(3),
(2010). Historical Review of Eel River Anadromous Salmonids, with Emphasis on Chinook Salmon, Coho Salmon and Steelhead.
Eel River Final Report, Feb. 2010 (1.34 MB)
(2010). 
Long term and recent trends in fishes and invertebrates in Suisun Marsh.
Interagency Ecological Program Newsletter. 23(2),
(2010).
(2010).
(2010). Myths of California water: implications and reality.
West Northwest. 3-73.
(2010).
(2010).
(2010). Status and conservation of lampreys in California.
Biology, management, and conservation, of lampreys in North America. 72, 279-292.
(2010). Biology, History, Status, and Conservation of Sacramento Perch, Archoplites interruptus: A Review .
San Francisco Estuary and Watershed Science. 9(1),
(2011). Conceptual model for restoration of the Klamath River.
(Thorsteinson, L., VanderKooi S., & Duffy W., Ed.).Proceedings of the Klamath Basin Science Conference, Medford, Oregon, February 1–5, 2010.
(2011). Development and evaluation of a fish-based index to assess biological integrity of Mediterranean streams.
Aquatic Conservation: Marine and Freshwater Ecosystems. 21(4), 324–337.
(2011). Environmental heterogeneity and community structure of the Kobuk River, Alaska, in response to climate change.
Ecosphere. 2(4), 1-19.
(2011). Executive Analysis of Restoration Actions in Big Springs Creek March 2008-September 2011.
Read full study (4.34 MB)
(2011).
(2011).
(2011).
(2011). 
Life history and population dynamics of Moerisia sp., a non-native hydrozoan, in the upper San Francisco Estuary (U.S.A.).
Estuarine, Coastal and Shelf Science. 94(1), 48 - 55.
(2011).
(2011).
(2011).
(2011).
(2011). Rapid decline of California’s native inland fishes: A status assessment.
Biological Conservation. 144(10),
(2011).
(2011). Review of Community ecology of stream fishes: concepts, approaches, and techniques, edited by K.B. Gido and D. A. Jackson.
Quarterly Review of Biology . 86(339),
(2011).
(2011). Trophic ecology of two non-native hydrozoan medusae in the upper San Francisco Estuary.
Marine and Freshwater Research. 62, 952–961.
(2011).
(2012).
Effects of Climate Change on the Inland Fishes of California: With Emphasis on the San Francisco Estuary Region.
Our Changing Climate.
(2012). Experimental Agricultural Floodplain Pilot Study, 2011-2012.
15.
Agricultural Floodplain Pilot Study 2011-2012 (4.52 MB)
(2012). 
Fishes.
Ecology, Conservation, and Restoration of Tidal Marshes: The San Francisco Estuary. 161-173.
(2012). Flows, droughts, and aliens: factors affecting the fish assemblage in a Sierra Nevada, California, stream.
Ecological Applications. 22(4), pp. 1146-1161.
(2012).
(2012). Impending extinction of salmon, steelhead, and trout (Salmonidae) in California.
Environmental Biology of Fishes.
(2012). Long-term captive breeding does not necessarily prevent reestablishment: lessons learned from Eagle Lake rainbow trout.
Reviews in Fish Biology and Fisheries. 22(1), 325-342.
(2012). Molecular Evidence for Multiple Paternity in a Population of the Viviparous Tule Perch Hysterocarpus traski.
Journal of Heredity. 104(2), 217-222.
(2012). Montane meadows in the Sierra Nevada: comparing terrestrial and aquatic assessment methods.
Environmental Monitoring and Assessment. 184(11), 6967-6986.
(2012). Projected Effects of Future Climates on Freshwater Fishes of California.
Our Changing Climate.
(2012). The Rebirth of California Fish & Game Code Section 5937: Water for Fish.
UC Davis Law Review. 45, 105.
The Rebirth of California Fish & Game Code Section 5937: Water for Fish (495.38 KB)
(2012). 
Restoring native fish assemblages to a regulated California stream using the natural flow regime concept.
Ecological Applications. 22(5), 10.
Kiernan et al. 2012, Ecological Applications (560.77 KB)
(2012). 
Review of An entirely synthetic fish: how rainbow trout beguiled America and overran the world by Anders Halverson.
Quarterly Review of Biology . 87(168),
(2012).