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2012
Moyle, P. B. (2012).  Review of An entirely synthetic fish: how rainbow trout beguiled America and overran the world by Anders Halverson. Quarterly Review of Biology . 87(168), 
Thompson, L. C., Voss J. L., Larsen R. E., Tietje W. D., Cooper R. A., & Moyle P. B. (2012).  Southern Steelhead, Hard Woody Debris, and Temperature in a California Central Coast Watershed. Transactions of the American Fisheries Society. 141(2), 275-284.
O'Rear, T., & Moyle P. B. (2012).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2011 - December 2011.
Thompson, L., Escobar M., Mosser C., Purkey D., Yates D., & Moyle P. B. (2012).  Water Management Adaptations to Prevent Loss of Spring-Run Chinook Salmon in California under Climate Change . Journal of Water Resources Planning and Management. 138(5), 465-478.PDF icon chinook.pdf (2.46 MB)
Jeffres, C., & Moyle P. B. (2012).  When Good Fish Make Bad Decisions: Coho Salmon in an Ecological Trap. North American Journal of Fisheries Management. 32, 87-92.
Moyle, P. B., Bennett W. A., Durand J. R., Fleenor W. E., Gray B. E., Hanak E., et al. (2012).  Where the Wild Things Aren’t Making the Delta a Better Place for Native Species. Public Policy Institute of California.
Moyle, P. B. (2012).  Writing review papers. (Jennings, C. A., Lauer T. E., & Vondracek B., Ed.).Scientific Communication for Natural Resource Professionals. 155-162.
2013
Wintzer, A. P., Meek M. H., & Moyle P. B. (2013).  Abundance, size, and diel feeding ecology of Blackfordia virginica (Mayer, 1910), a non-native hydrozoan in the lower Napa and Petaluma Rivers, California (USA). Aquatic Invasions. 8(2), 147–156.
Lund, J. R., & Moyle P. B. (2013).  Adaptive Management and Science for the Delta Ecosystem. San Francisco Estuary and Watershed Science. 11(3), 
Durand, J. R., De Carion D., Young M., Montgomery J., Perales M., Berridge K., et al. (2013).  Cache Slough and the Northern Arc of Native Fishes.
Moyle, P. B. (2013).  Climate Change Vulnerability of Native and Alien Freshwater Fishes of California: A Systematic Assessment Approach . (Kiernan, J. D., Crain P. K., & Quiñones R. M., Ed.).PLoS ONE. PDF icon journal.pone_.0063883.pdf (734.37 KB)
Moyle, P. B., Kiernan J. D., Crain P. K., & Quiñones R. M. (2013).  Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach. PDF icon Moyle et al 2013 fw fishes cc Plos One.pdf (734.37 KB)
Medellín-Azuara, J., Durand J. R., Fleenor W. E., Hanak E., Lund J. R., Moyle P. B., et al. (2013).  Costs of Ecosystem Management Actions for the Sacramento-San Joaquin Delta.
Katz, J. V. E., Jeffres C., Conrad L., Sommer T., Corline N. J., Martinez J., et al. (2013).  Experimental Agricultural Floodplain Habitat Investigation at Knaggs Ranch on Yolo Bypass, 2012-2013. PDF icon Knaggs 2013 Preliminary Report (4.12 MB)
Moyle, P. B., Manfree A. D., & Fiedler P. L. (2013).  The Future of Suisun Marsh as Mitigation Habitat. San Francisco Estuary and Watershed Science. 11(3), 
Baxa, D. V., Stover A., Clifford M., Kurobe T., Teh S. J., Moyle P. B., et al. (2013).  Henneguya sp. in yellowfin goby Acanthogobius flavimanus from the San Francisco Estuary. SpringerPlus. 2, 420.
Katz, J. V. E., Moyle P. B., Quiñones R. M., Israel J. A., & Purdy S. (2013).  Impending extinction of salmon, steelhead, and trout (Salmonidae) in California. Environmental Biology of Fishes. 96, 1169-1186.PDF icon Katz_et_al._2013 salmonids in CA.pdf (517.46 KB)
Moyle, P. B. (2013).  Novel Aquatic Ecosystems: The New Reality For Streams In California And Other Mediterranean Climate Regions. River Research and Applications. PDF icon Novel aquatic ecosystems (2.62 MB)
Skiles, T. D., Yoshiyama R. M., & Moyle P. B. (2013).  Pink salmon (Oncorhynchus gorbuscha) in the Salinas River, California: a new record and historical perspectives. California Fish and Game. 99(1), 55-59.
Carmona-Catot, G., & Moyle P. B. (2013).  Re-establishment of the natural life histories of Eagle Lake rainbow trout, USA. (Soorae, P.. S., Ed.).Global Re-introduction Perspectives: 2013. Further case studies from around the globe. 21-25.
Hanak, E., Phillips C., Lund J. R., Durand J. R., Mount JF., & Moyle P. B. (2013).  Scientist and Stakeholder Views on the Delta Ecosystem. 106.
Hanak, E., Durand J. R., Fleenor W. E., Gray B. E., Medellín-Azuara J., Mount JF., et al. (2013).  Stress Relief: Prescriptions for a Healthier Delta Ecosystem. 32.PDF icon Main Report Delta Stressors (9.72 MB)
O'Rear, T., & Moyle P. B. (2013).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2010 - December 2010.
O'Rear, T., & Moyle P. B. (2013).  Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2012 - December 2012.
O'Rear, T., & Moyle P. B. (2013).  Trends in fish and invertebrate populations of Suisun Marsh January 2009 - December 2009.
2014
Grantham, T. E., & Moyle P. B. (2014).  Assessing flows for fish below dams: A systematic approach to evaluate compliance with California Fish and Game Code 5937. Center for Watershed Sciences Technical Reports. 1-136.PDF icon Download complete report (5.64 MB)
Quiñones, R. M., & Moyle P. B. (2014).  Climate change vulnerability of freshwater fishes in the San Francisco Bay Area. San Francisco Estuary and Watershed Science. 12(3), PDF icon Quinones and Moyle 2014 cc in SFBA.pdf (324.79 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. PDF icon Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California (655.17 KB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2014).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. PDF icon Quinones et al 2014 dam removal.pdf (639.53 KB)
O'Rear, T., & Moyle P. B. (2014).  Fishes and aquatic macroinvertebrates. Suisun Marsh - ecological history and possible futures.
Quiñones, R. M., Johnson M. L., & Moyle P. B. (2014).  Hatchery practices may result in replacement of wild salmonids: adult trends in the Klamath basin, California. Environmental biology of fishes. 97, 233–246.
Bunn, D. A., Moyle P. B., & Johnson C. K. (2014).  Maximizing the ecological contribution of conservation banks. Wildlife Society Bulletin. 38(2), 377–385.
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California. PLOS One. 9(5), PDF icon journal.pone_.0098392.pdf (702.76 KB)
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential factors affecting survival differ by run-timing and location: linear mixed-effects models of Pacific salmonids (Oncorhynchus spp.) in the Klamath River, California. PDF icon Quinones et al 2014 survival linear mixed-effects models.pdf (689.29 KB)
Santos, N. R., Katz J. V. E., Moyle P. B., & Viers J. H. (2014).  A programmable information system for management and analysis of aquatic species range data in California. Environmental Modelling & Software. 53, 13 - 26.PDF icon Santos_et_al_PISCES-2014.pdf (2.98 MB)
Herbold, B., Baltz D. M., Brown L. R., Grossinger R., Kimmerer W., Lehman P., et al. (2014).  The role of tidal marsh restoration in fish management in the San Francisco Estuary. San Francisco Estuary and Watershed Science. 12(1), 
Moyle, P. B., Manfree A. D., & Fiedler P. L. (2014).  Suisun Marsh: Ecological History and Possible Futures. 256.
Moyle, P. B., Manfree A. D., & Fiedler P. L. (2014).  Suisun Marsh: Ecological History and Possible Futures. 256.
Grantham, T. E., Viers J. H., & Moyle P. B. (2014).  Systematic Screening of Dams for Environmental Flow Assessment and Implementation. BioScience. 64(10), 1-13.PDF icon Journal article (3.13 MB)PDF icon Appendix 1: Hydo model performance (108.16 KB)PDF icon Appendix 2: Flow-sensitive fishes (84.55 KB)PDF icon Appendix 3: Candidate dams (134.83 KB)PDF icon Appendix 4: Dam ranking (105 KB)
Grantham, T. E., Viers J. H., & Moyle P. B. (2014).  Systematic screening of dams for environmental flow assessment and implementation. BioScience. 65(6), 1006-1018.
2015
Chornesky, E. A., Ackerly D. D., Beier P., Davis F. W., Flint L. E., Lawler J. J., et al. (2015).  Adapting California's Ecosystems to a Changing Climate. BioScience. 65(3), 247–262.
Schroeter, RE., O'Rear T., Young M., & Moyle P. B. (2015).  The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3), 
Light, T.., Moyle P. B., & J Clode C. (2015).  Assembly rules and novel assemblages in aquatic ecosystems. Biological Invasions in Changing Ecosystems Vectors, Ecological Impacts, Management and Predictions.
Quiñones, R. M., & Moyle P. B. (2015).  California’s freshwater fishes: status and management. FISHMED Fishes in Mediterranean Environments. 20p.PDF icon Complete study (1.46 MB)
Quiñones, R. M., Grantham T. E., Harvey B. N., Kiernan J. D., Klasson M., Wintzer A. P., et al. (2015).  Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. 25(1), 195-215.
O’Rear, T., & Moyle P. B. (2015).  Diets of two alien predators - adult striped bass and white catfish - in Suisun Marsh. PDF icon ORear CA NV AFS Presentation Striped Bass White Catfish Diets2015.pdf (2.89 MB)
Perales, M., Rowan J., & Moyle P. B. (2015).  Evidence of Landlocked Chinook Salmon Populations in California. North American Journal of Fisheries Management. 35(6), PDF icon Perales_Salmon.pdf (498.87 KB)
Moyle, P. B., Quiñones R. M., Katz J. V. E., & Weaver J. (2015).  Fish Species of Special Concern in California. Sacramento: California Department of Fish and Wildlife. https://www.wildlife.ca.gov/Conservation/Fishes/Special-Concern,
Howard, J., Klausmeyer K., Furnish J., Gardali T., Grantham T. E., Katz J., et al. (2015).  Patterns of Freshwater Species Richness, Endemism, and Vulnerability in California. PLoS ONE. 10(7), PDF icon Read full study (3.16 MB)
Durand, J. R., & Moyle P. B. (2015).  San Francisco Estuary: Time for a Reconciliation Approach to Species Conservation.