Southern Steelhead, Hard Woody Debris, and Temperature in a California Central Coast Watershed. Transactions of the American Fisheries Society. 141(2), 275-284.(2012).
Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2011 - December 2011.(2012).
Water Management Adaptations to Prevent Loss of Spring-Run Chinook Salmon in California under Climate Change . Journal of Water Resources Planning and Management. 138(5), 465-478.(2012).
When Good Fish Make Bad Decisions: Coho Salmon in an Ecological Trap. North American Journal of Fisheries Management. 32, 87-92.(2012).
Where the Wild Things Aren’t Making the Delta a Better Place for Native Species. Public Policy Institute of California.(2012).
Abundance, size, and diel feeding ecology of Blackfordia virginica (Mayer, 1910), a non-native hydrozoan in the lower Napa and Petaluma Rivers, California (USA). Aquatic Invasions. 8(2), 147–156.(2013).
Adaptive Management and Science for the Delta Ecosystem. San Francisco Estuary and Watershed Science. 11(3),(2013).
Climate change vulnerability of native and alien freshwater fishes of California: a systematic assessment approach.(2013).
Climate Change Vulnerability of Native and Alien Freshwater Fishes of California: A Systematic Assessment Approach . (Kiernan, J. D., Crain P. K., & Quiñones R. M., Ed.).PLoS ONE.(2013).
Experimental Agricultural Floodplain Habitat Investigation at Knaggs Ranch on Yolo Bypass, 2012-2013.(2013).
The Future of Suisun Marsh as Mitigation Habitat. San Francisco Estuary and Watershed Science. 11(3),(2013).
Henneguya sp. in yellowfin goby Acanthogobius flavimanus from the San Francisco Estuary. SpringerPlus. 2, 420.(2013).
Impending extinction of salmon, steelhead, and trout (Salmonidae) in California. Environmental Biology of Fishes. 96, 1169-1186.(2013).
Molecular evidence for multiple paternity in a population of the viviparous tule perch, Hysterocarpus traski. Journal of Heredity. 104(2),(2013).
Novel Aquatic Ecosystems: The New Reality For Streams In California And Other Mediterranean Climate Regions. River Research and Applications.(2013).
Pink salmon (Oncorhynchus gorbuscha) in the Salinas River, California: a new record and historical perspectives. California Fish and Game. 99(1), 55-59.(2013).
Re-establishment of the natural life histories of Eagle Lake rainbow trout, USA. (Soorae, P. S., Ed.).Global Re-introduction Perspectives: 2013. Further case studies from around the globe. 21-25.(2013).
Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2012 - December 2012.(2013).
Suisun Marsh Fish Study: trends in fish and invertebrate populations of Suisun Marsh January 2010 - December 2010.(2013).
Assessing flows for fish below dams: A systematic approach to evaluate compliance with California Fish and Game Code 5937. Center for Watershed Sciences Technical Reports. 1-136.(2014).
Climate change vulnerability of freshwater fishes in the San Francisco Bay Area. San Francisco Estuary and Watershed Science. 12(3),(2014).
Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries.(2014).
Fishes and aquatic macroinvertebrates. Suisun Marsh - ecological history and possible futures.(2014).
Hatchery practices may result in replacement of wild salmonids: adult trends in the Klamath basin, California. Environmental biology of fishes. 97, 233–246.(2014).
Maximizing the ecological contribution of conservation banks. Wildlife Society Bulletin. 38(2), 377–385.(2014).
Potential factors affecting survival differ by run-timing and location: linear mixed-effects models of Pacific salmonids (Oncorhynchus spp.) in the Klamath River, California.(2014).
Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California. PLOS One. 9(5),(2014).
A programmable information system for management and analysis of aquatic species range data in California. Environmental Modelling & Software. 53, 13 - 26.(2014).
The role of tidal marsh restoration in fish management in the San Francisco Estuary. San Francisco Estuary and Watershed Science. 12(1),(2014).
Systematic screening of dams for environmental flow assessment and implementation. BioScience. 65(6), 1006-1018.(2014).
Systematic Screening of Dams for Environmental Flow Assessment and Implementation. BioScience. 64(10), 1-13.(2014).
Adapting California's Ecosystems to a Changing Climate. BioScience. 65(3), 247–262.(2015).
The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3),(2015).
Assembly rules and novel assemblages in aquatic ecosystems. Biological Invasions in Changing Ecosystems Vectors, Ecological Impacts, Management and Predictions.(2015).
California’s freshwater fishes: status and management. FISHMED Fishes in Mediterranean Environments. 20p.(2015).
Dam removal and anadromous salmonid (Oncorhynchus spp.) conservation in California. Reviews in Fish Biology and Fisheries. 25(1), 195-215.(2015).
Evidence of Landlocked Chinook Salmon Populations in California. North American Journal of Fisheries Management. 35(6),(2015).
Fish Species of Special Concern in California. Sacramento: California Department of Fish and Wildlife. https://www.wildlife.ca.gov/Conservation/Fishes/Special-Concern,(2015).
Fishes of the Nurse-Denverton Complex: managed wetlands and tidal waterways in Suisun Marsh. IEP Newsletter.(2015).