Publications

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A
Adams, P. B., Botsford L. W., Gobalet K. W., Leidy R. A., McEwan D. R., Moyle P. B., et al. (2007).  Coho Salmon are Native South of San Francisco Bay: A Reexamination of North American Coho Salmon's Southern Range Limit. Fisheries. 32(9), 441-451.
Adams, L., Lund J. R., Moyle P. B., Quiñones R. M., Herman J., & O'Rear T. (2017).  Environmental hedging: Theory and method for reconciling reservoir operations for downstream ecology and water supply. Water Resources Research.
Adans, J.R.., & Moyle P. B. (1975).  Some effects of impoundments on populations of stream fish. (Moyle, P. B., & Koch D.L.., Ed.).Symposium on Trout/Nongame Fish Relationships in Streams. 17, 31-40.
Akhbari, M., & Grigg N. (2014).  Water Management Trade-offs between Agriculture and the Environment: A Multiobjective Approach and Application . Journal of Irrigation and Drainage Engineering. PDF icon Water management study (8.05 MB)
Akhbari, M., & Grigg N. (2013).  A Framework for an Agent-Based Model to Manage Water Resources Conflicts. Water Resources Management. 27(11), 4039-4052.PDF icon Masih Akhbari - Agent Based Modeling.pdf (378.59 KB)
Ali, O. A., O'Rourke S. M., Amish S. J., Meek M. H., Luikart G., Jeffres C., et al. (2016).  RAD Capture (Rapture): Flexible and Efficient Sequence-Based Genotyping. Genetics. 202 (2), 
Alley, D. W., Dettman DH., Li HW., & Moyle P. B. (1977).  Habitats of native fishes in the Sacramento River basin. (Sands, A.., Ed.).Riparian Forests in California: Their Ecology and Conservation Institute of Ecology Publication. 87-94.
Alston, J. M., Medellín-Azuara J., & Saitone T. L. (2014).  Economic Impact of the North American Cranberry Industry.
Anzueto-Calvo, M. J., Velazquez-Velazquez E., Gomez-Gonzalez A. E., Quiñones R. M., & Olson B. J. (2013).  Peces de la Reserva de la Biosfera Selva El Ocote, Chiapas, México. PDF icon A guide to fishes in the El Ocote Reserve, Chiapas, Mexico (2.68 MB)
Aparicio, E., Carmona-Catot G., Moyle P. B., & García-Berthou E. (2011).  Development and evaluation of a fish-based index to assess biological integrity of Mediterranean streams. Aquatic Conservation: Marine and Freshwater Ecosystems. 21(4), 324–337.
Austin, C. (2015).  California’s groundwater – basics, laws, and beyond. PDF icon California WaterBlog article, Dec. 7, 2015 (964.77 KB)
B
Baird, I., Hogan Z., Phylaivanh B., & Moyle P. B. (2001).  A Communal Fishery for the Migratory Catfish Pangasius macronemain the Mekong River. Asian Fisheries Science. 14, 25–41.
Baltz, D. M., Moyle P. B., & Knight N. J. (1982).  Competitive Interactions Between Benthic Stream Fishes, Riffle Sculpin, Cottus gulosus, and Speckled Dace, Rhinichthys osculus. Canadian Journal of Fisheries and Aquatic Sciences. 39(11), 1502-1511.
Baltz, D. M., Vondracek B., Brown L. R., & Moyle P. B. (1987).  Influence of Temperature on Microhabitat Choice by Fishes in a California Stream. Transactions of the American Fisheries Society. 116(1), 12-20.
Baltz, D. M., Moyle P. B., & Miller G.. T. (1990).  Marine and freshwater fishery resources. (Miller, G.. T., Ed.).Resource Conservation and Management. 303-339.
Baltz, D. M., & Moyle P. B. (1982).  The influence of riparian vegetation on stream fish communities of California. (Warner, P.., & Hendrix H.., Ed.).California Riparian Systems. 183-187.
Baltz, D. M., & Moyle P. B. (1981).  Morphometric Analysis of Tule Perch (Hysterocarpus traski) Populations in Three Isolated Drainages. Copeia. 1981(2), 305-311.
Baltz, D. M., & Moyle P. B. (1993).  Invasion Resistance to Introduced Species by a Native Assemblage of California Stream Fishes. Ecological Applications. 3(2), 246-255.
Baltz, D. M., & Moyle P. B. (1984).  Segregation by species and size classes of rainbow trout, Salmo gairdneri, and Sacramento sucker, Catostomus occidentalis, in three California streams. Environmental Biology of Fishes. 10(1-2), 101-110.
Baltz, D. M., & Moyle P. B. (1982).  Life history characteristics of tule perch (Hysterocarpus traski) populations in contrasting environments. Environmental Biology of Fishes. 7(3), 229-242.
Baltz, D. M., Vondracek B., Brown L. R., & Moyle P. B. (1991).  Seasonal Changes in Microhabitat Selection by Rainbow Trout in a Small Stream. Transactions of the American Fisheries Society. 120(2), 166-176.
Barnett-Johnson, R. (2007).  Spatial scales of mixing and natal source contributions of salmon populations in the coastal ocean detected by otolith and genetic signatures of origin. Department of Ecology and Evolutionary Biology, University of California, Santa Cruz. PhD,
Barnett-Johnson, R., Grimes CB., Royer CF., & Donohoe CJ. (2007).  Identifying the contribution of wild and hatchery Chinook salmon (Oncorhynchus tshawytscha) to the ocean fishery using otolith microstructure as natural tags. Canadian Journal of Fisheries and Aquatic Sciences. 64,
Barnett-Johnson, R., Grimes CB., Royer CF., & Donohoe CJ. (2008).  Tracking natal origins of salmon using isotopes, otoliths, and landscape geology. Limnology and Oceanography. 53(4), 
Barnett-Johnson, R., Ramos FC., Grimes CB., & MacFarlane RB. (2005).  Validation of Sr isotopes in otoliths by laser ablation multicollector inductively coupled plasma mass spectrometry (LA-MC-ICPMS): opening avenues in fisheries science applications. Canadian Journal of Fisheries and Aquatic Sciences. 62,
Barnett-Johnson, R., Teel DJ., & Casillas E. (2010).  Genetic and otolith isotopic markers identify salmon populations in the Columbia River at broad and find geographic scales. Environmental Biology of Fishes. 89,
Bartolomeo, E., Medellín-Azuara J., & Lund J. R. (2011).  Allocating Scarce Water Between Interior and Exterior Uses In Southern California. California Water and Environmental Modeling Forum.
Baumsteiger, J., Moyle P. B., S.A. A., O'Rourke S. M., & Miller M. R. (2017).  Genomics Clarifies Taxonomic Boundaries in a Difficult Species Complex.. PLoS ONE. 12(12), 
Baumsteiger, J., O'Rear T., Cook J., Manfree A., & Moyle P. B. (2017).  Factors affecting distribution and abundance of jellyfish medusae in a temperate estuary: a multi-decadal study. Biological Invasions.
Baumsteiger, J., & Moyle P. B. (2017).  Assessing Extinction. Bioscience. 67,
Baumsteiger, J., Schroeter R., O'Rear T., Cook J., & Moyle P. B. (2017).  Long-term surveys show invasive overbite clams (Potamocorbula amurensis) are spatially limited in Suisun Marsh. San Francisco Estuary and Watershed Science. 15(1), 
Baxa, D. V., Stover A., Clifford M., Kurobe T., Teh S. J., Moyle P. B., et al. (2013).  Henneguya sp. in yellowfin goby Acanthogobius flavimanus from the San Francisco Estuary. SpringerPlus. 2, 420.
Behrens, D.., Fleenor W. E., DeGeorge J.., & Bombardelli F. (2009).  Instructional Manual for the Water Analysis Module (WAM), v.1. 1-69.PDF icon Manual for Water Analysis Module (3.28 MB)
Bennett, W. A. (2005).  Critical assessment of the delta smelt population in the San Francisco Estuary, California. San Francisco Estuary and Watershed Science. 3(2), 
Bennett, W. A., & Moyle P. B. (1996).  Where have all the fishes gone: interactive factors producing fish declines in the Sacramento-San Joaquin estuary. (Hollibaugh, J.. T., Ed.).San Francisco Bay: the Ecosystem. 519-542.
Bennett, W. A., Hanak E., Lund J. R., & Moyle P. B. (2008).  An expert survey on the viability of delta fish populations. Technical Appendix E to Comparing Futures for the Sacramento–San Joaquin Delta. 29.
Bondi, C., Yarnell S. M., & Lind A. J. (2013).  Transferability of habitat suitability criteria for a stream breeding frog (Rana boylii) in the Sierra Nevada, California. Herpetological Conservation and Biology. 8(1), 88-103.
Börk, K. S., Krovoza J. F., Katz J. V. E., & Moyle P. B. (2012).  The Rebirth of California Fish & Game Code Section 5937: Water for Fish. UC Davis Law Review. 45, 105.PDF icon The Rebirth of California Fish & Game Code Section 5937: Water for Fish (495.38 KB)
Bowman, C. (2014).  A Watershed Momentum. UC Davis Magazine. PDF icon Watershed Momentum (1.63 MB)
Boyle, D. B., King A. M., Kourakos G., Lockhart K., Mayzelle M. M., Fogg G., et al. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 4 - Nitrate Occurrence in Groundwater.
Broadway, J. E., & Moyle P. B. (1978).  Aspects of the ecology of the prickly sculpin,Cottus asper Richardson, a persistent native species in Clear Lake, Lake County, California. Environmental Biology of Fishes. 3(4), 337-343.
Brogan, S. D., & Gailey R. (1995).  A Method for Estimating Field-Scale Mass Transfer Rate Parameters and Assessing Aquifer Cleanup Times. Ground Water. 33(6), 997–1009.
Brown, L. R., Moyle P. B., Bennett W. A., & Quelvog B. D. (1992).  Implications of morphological variation among populations of California roach Lavinia symmetricus (Cyprinidae) for conservation policy. Biological Conservation. 62(1), 1 - 10.
Brown, K., & Pasternack G. (2005).  Natural and anthropogenic geochemical signatures of floodplain and deltaic sedimentary strata, Sacramento Delta, CA. Environmental Pollution. 141(2), 
Brown, L. R., & Moyle P. B. (1991).  Changes in Habitat and Microhabitat Partitioning within an Assemblage of Stream Fishes in Response to Predation by Sacramento Squawfish (Ptychocheilus grandis). Canadian Journal of Fisheries and Aquatic Sciences. 48(5), 849-856.
Brown, L. R., & Moyle P. B. (1992).  Native fishes of the San Joaquin drainage: status of a remnant fauna and its habitats. (Williams, D.. L., Byrne S.., & Rado T.. A., Ed.).Endangered and sensitive species of the San Joaquin Valley, California: their biology, management and conservation. 89–98.
Brown, L. R., & Moyle P. B. (1993).  Distribution, ecology, and status of the fishes of the San Joaquin River drainage, California. California Fish and Game. 79(3), 96–114.
Brown, L. R., & Moyle P. B. (1981).  The Impact of Squawfish on Salmonid Populations: A Review. North American Journal of Fisheries Management. 1(2), 104-111.
Brown, L. R., Matern S. A., & Moyle P. B. (1995).  Comparative ecology of prickly sculpin, Cottus asper, and coastrange sculpin, C. aleuticus, in the Eel River, California. Environmental Biology of Fishes. 42(4), 329-343.
Brown, L. R., & Moyle P. B. (1997).  Invading species in the Eel River, California: successes, failures, and relationships with resident species. Environmental Biology of Fishes. 49(3), 271-291.