Publications

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Journal Article
Feyrer, F., Whitman G., Young M., & Johnson RC. (2019).  Strontium isotopes reveal ephemeral streams used for spawning and rearing by an imperilled potamodromous cyprinid Clear Lake hitch Lavinia exilicauda chi. Marine and Freshwater Research. https://doi.org/10.1071/MF18264,
Godbout, L., Wood CC., Withler RE., Latham S., Nelson RJ., Wetzel L., et al. (2011).  Sockeye salmon (Oncorhynchus nerka) return after an absence of nearly 90 years: a case of reversion to anadromy. Canadian Journal of Fisheries and Aquatic Sciences. 68,
Woodson, LE., Well BK., Weber PK., MacFarlane RB., Whitman GE., & Johnson RC. (2013).  Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytcha.. Marine Ecology Progress Series. 487,
Windell, S., Brandes PL., Conrad JL., Ferguson JW., Goertler PAL., Harvey BN., et al. (2017).  Scientific framework for assessing factors influencing endangered Sacramento River winter-run Chinook (Oncorhynchus tshawytscha) across the life cycle. NOAA Technical Memorandum . NMFS-SWFSC-586, PDF icon NOAA-TM-NMFS-SWFSC-586_Final.pdf (1.62 MB)
Johnson, RC., Windell S., Brandes P., Conrad JL., Ferguson J., Goertler PAL., et al. (2017).  Science advancements key to increasing management value of life stage monitoring networks for endangered Sacramento River Winter run Chinook salmon in California. San Francisco Estuary and Watershed Science. 13(3), PDF icon Johnson_2017_SFEWS.pdf (3.55 MB)
Limburg, K., Brown R. L., Johnson RC., Pine B., Rulifson R., Secor D., et al. (2016).  Round-the-Coast: Snapshots of Estuarine Climate Change Effects. Fisheries. 41(7), 
Jensen, GC., & Johnson RC. (1999).  Reinstatement and further description of Eualus subtilis Carvacho & Olsen, and comparison with E. lineatus Wicksten & Butler (Crustacea: Decapoda: Hippolytidae). Proceeding of the Biological Society of Washington. 112(1), 
Sturrock, A.M.., Wikert JD., Heyne T., Mesick C., Hubbard AE., Hinkelman TM., et al. (2015).  Reconstructing the migratory behavior and long-term survivorship of juvenile Chinook salmon under contrasting hydrologic regimes. PLoS ONE. 10(5), PDF icon Sturrock_Plosone.pdf (1.92 MB)
Sturrock, A.M.., Hunter E., Milton AEIMF., Johnson RC., Waring CP., & Trueman CN. (2015).  Quantifying physiological influences on otolith microchemistry. Methods in Ecology and Evolution. 6, PDF icon Sturrock et al 2015 Quantifying physiological influences on otolith microchemistry MEE_small.pdf (918.81 KB)
Feyrer, FV., Hobbs J., Acuna S., Mahardja B., Grimaldo L., Baerwald B., et al. (2015).  Metapopulation structure of a semi-anadromous fish in a dynamic environment. Canadian Journal of Fisheries and Aquatic Sciences. 72(5), 
Herbold, B.. (2018).  Managing for salmon resilience in California’s variable and changing climate. (Carlson, SM., Henery R., Johnson RC., Mantua N., Moyle P. B., & Sommer T., Ed.).San Francisco Estuary and Watershed Sciences. 16(2), PDF icon SFEWS_Herbold_0818_final.pdf (6.85 MB)
Johnson, RC., Weber PK., Wikert JD., Workman M., MacFarlane RB., Grove MJ., et al. (2012).  Managed metapopulations: Do salmon hatchery ‘sources’ lead to in-river ‘sinks’ in conservation?. PLos ONE. 7(2), PDF icon 2012_Johnson_plosone.pdf (418.82 KB)
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Life history and current monitoring inventory of San Francisco Estuary sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-589, PDF icon NOAA-TM-NMFS-SWFSC-589.pdf (420.07 KB)
Johnson, RC., Garza JC., MacFarlane RB., Phillis CC., Koch PL., Weber PK., et al. (2016).  Isotopes and genes reveal freshwater origins of Chinook salmon (Oncorhynchus tshawytscha) aggregations in California’s coastal ocean. Marine Ecology Progress Series. 548,
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Improved fisheries management through life stage monitoring: the case for the Southern Distinct Population Segment of North American Green Sturgeon and the Sacramento-San Joaquin River White Sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-588, PDF icon NOAA-TM-NMFS-SWFSC-588.pdf (1.53 MB)
Willmes, M., Hobbs J. A., Sturrock A.M.., Bess Z., Lewis L.S., Glessner JG., et al. (2018).  Fishery collapse, recovery, and the cryptic decline of wild salmon on a major California River. Canadian Journal of Fisheries and Aquatic Sciences. PDF icon cjfas-2017-0273.pdf (7.7 MB)
Phillis, C.C.., Sturrock A.M.., Johnson RC., & Weber P.K.. (2018).  Endangered winter-run Chinook salmon rely on diverse rearing habitats in a highly altered landscape.. Biological Conservation. 217, PDF icon Phillis_et_al_2017_Biological_Conservation.pdf (907.84 KB)
Book Chapter
Hobson, K., Cerling T., & Johnson RC. (2010).  Isotope tracking of terrestrial and freshwater vertebrates. (Bowen, G., Dawson T., & Tu K., Ed.).Isoscapes: Understanding movement patterns and processes on earth through isotope mapping.
Johnson, RC., Lindley TC., Spence BC., Boughton DA., Crozier LG., Mantua NJ., et al. (2016).  Central Valley Domain. (Williams, TH., Ed.).Viability assessment for Pacific salmon and steelhead listed under the Endangered Species Act: Southwest. NOAA Technical Memorandum NMFS-SWFSC-564, PDF icon NOAA-TM-NMFS-SWFSC-564.pdf (6.23 MB)