Publications

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Book Chapter
Podolak, K., & Yarnell S. M. (2015).  Adaptive management in Federal Energy Regulatory Commission relicensing. The Water Sustainability Reader: Lessons from California for the 21st Century. 193-211.
Yoshiyama, R. M., Gerstung E. R., Fisher F. W., & Moyle P. B. (1996).  Historical and present distribution of Chinook salmon in the Central Valley drainage of California. Sierra Nevada Ecosystem Project: Final report to Congress , Vol. III, assessments, commissioned reports, and background information. 3, 309-362.
Moyle, P. B., Randall P. J., & Yoshiyama R. M. (1996).  Potential aquatic diversity management areas in the Sierra Nevada. Sierra Nevada Ecosystem Project: Final report to Congress , Vol. III, assessments, commissioned reports, and background information. 3, 409-478.
Yarnell, S. M. (2008).  Quantifying physical habitat heterogeneity in an ecologically meaningful manner: A case study of the habitat preferences of the Foothill yellow-legged frog (Rana boylii). Landscape Ecology Research Trends.
Lund, J. R., Hui R., Escriva-Bou A., Porse E., Adams L., Connaughton J., et al. (2017).  Reservoir Operation Design. The Handbook of Applied Hydrology.
Moyle, P. B., & Yoshiyama R. M. (1997).  The role of adaptive management in restoring chinook salmon to the Tuolumne River. (Wang, S. S. Y., & Carstens T., Ed.).Environmental and Coastal Hydraulics: Protecting the Aquatic Habitat. 557-562.
Moyle, P. B., Yoshiyama R. M., & Knapp R. A. (1996).  Status of fish and fisheries. Sierra Nevada ecosystem project: Final report to Congress Vol. II, assessments, commissioned reports, and background information. 2, 953-973.
Yarnell, S. M. (2013).  Stream Habitat Associations of the Foothill Yellow-Legged Frog (Rana boylii): The Importance of Habitat Heterogeneity. Ecohydraulics: An Integrated Approach. 193-212.PDF icon Chapter 11 in Ecohydraulics: An Integrated Approach (3.99 MB)
Rheinheimer, D. E., & Yarnell S. M. (2017).  Tools for sediment management in rivers. Water for the Environment: Policy, Science, and Integrated Management.
Journal Article
Schroeter, RE., O'Rear T., Young M., & Moyle P. B. (2015).  The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3), 
Steel, A. E., Peek R. A., Lusardi R. A., & Yarnell S. M. (2018).  Associating metrics of hydrologic variability with benthic macroinvertebrate communities in regulated and unregulated snowmelt-dominated rivers. Freshwater Biology. 63(8), 844-858.
Stein, E. D., Zimmerman J., Yarnell S. M., Stanford B., Lane B. A., Taniguchi-Quan K. T., et al. (2021).  The California Environmental Flows Framework: Meeting the Challenges of Developing a Large-Scale Environmental Flows Program. Frontiers in Environmental Sciences. 9, PDF icon Stein et al-CEFF Development _Frontiers 2021 PUBLISHED.pdf (1.17 MB)
Yoshiyama, R. M., Moyle P. B., Gerstung E. R., & Fisher F. W. (2000).  Chinook Salmon in the California Central Valley: An Assessment. Fisheries. 25(2), 6-20.
Adams, P. B., Botsford L. W., Gobalet K. W., Leidy R. A., McEwan D. R., Moyle P. B., et al. (2007).  Coho Salmon are Native South of San Francisco Bay: A Reexamination of North American Coho Salmon's Southern Range Limit. Fisheries. 32(9), 441-451.
Yarnell, S. M., Lind A. J., & Mount JF. (2012).  Dynamic flow modelling of riverine amphibian habitat with application to regulated flow management. River Research and Applications. 28, 177-191.
Milner, V., Yarnell S. M., & Peek R. A. (2018).  The ecological importance of unregulated tributaries to macroinvertebrate diversity and community composition in a regulated river. Hydrobiologia. 829, 291-305.
Yarnell, S. M., Viers J. H., & Mount JF. (2010).  Ecology and Management of the Spring Snowmelt Recession. Bioscience. 60(2), 
Young, M., Perales M., Durand J. R., & Moyle P. B. (2016).  Fish distribution in the cache slough complex of the Sacramento-San Joaquin Delta during a drought. IEP Newsletter.
Young, M., Howe E., O'Rear T., Berridge K., & Moyle P. B. (2020).  Food Web Fuel Differs Across Habitats and Seasons of a Tidal Freshwater Estuary. Estuaries and Coasts. 188,
Yarnell, S. M., Stein E. D., Webb J.A., Grantham T. E., Lusardi R. A., Zimmerman J., et al. (2020).  A functional flows approach to selecting ecologically relevant flow metrics for environmental flow applications. River Research and Applications. 36(2), 318–324.PDF icon Yarnell et al. 2020 RRA (759.84 KB)
Yarnell, S. M., Petts G., Schmidt J., Whipple A., Beller E., Dahm C., et al. (2015).  Functional Flows in Modified Riverscapes: Hydrographs, Habitats and Opportunities. BioScience. 65(9), PDF icon BioScience-2015-Yarnell-biosci_biv102.pdf (327.28 KB)
Young, M., Berridge K., O'Rear T., Moyle P. B., & Durand J. R. (2017).  Habitat partitioning by native and non-native fishes and decapods in novel habitats of the upper San Francisco Estuary. Biological Invasions.
Yoshiyama, R. M., Fisher F. W., & Moyle P. B. (1998).  Historical Abundance and Decline of Chinook Salmon in the Central Valley Region of California. North American Journal of Fisheries Management. 18(3), 487-521.
Rheinheimer, D. E., Yarnell S. M., & Viers J. H. (2013).  Hydropower Costs Of Environmental Flows And Climate Warming In California’s Upper Yuba River Watershed. River Research and Applicatiions. 29(10), 1291-1305.
Yarnell, S. M., Mount JF., & Larsen E. W. (2006).  The influence of relative sediment supply on riverine habitat heterogeneity. Geomorphology. 80, 310-324.
Forni, L. G., Medellín-Azuara J., Tansey M., Young C., Purkey D., & Howitt R. (2016).  Integrating Complex Economic and Hydrologic Planning Models: An Application for Drought Under Climate Change Analysis. Water Resources and Economics.
Yarnell, S. M., Peek R. A., Keung N., Todd B. D., Lawler S., & Brown C. (2019).  A lentic breeder in lotic waters: Sierra Nevada Yellow-Legged Frog (Rana sierrae) habitat suitability in northern Sierra Nevada streams. Copeia.
Yarnell, S. M., Peek R. A., Epke G., & Lind A. J. (2016).  Management of the Spring Snowmelt Recession in Regulated Systems. JAWRA Journal of the American Water Resources Association. 52, 723-736.
Young, C., Escobar M., Fernandes M., Joyce B., Kiparsky M., Mount JF., et al. (2009).  Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6), 
Young, C., Escobar M., Fernandes M., Joyce B., Kiparsky M., Mount JF., et al. (2009).  Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6), 
Skiles, T. D., Yoshiyama R. M., & Moyle P. B. (2013).  Pink salmon (Oncorhynchus gorbuscha) in the Salinas River, California: a new record and historical perspectives. California Fish and Game. 99(1), 55-59.
Moyle, P. B., & Yoshiyama R. M. (1994).  Protection of Aquatic Biodiversity in California: A Five-tiered Approach. Fisheries. 19(2), 6-18.
Fong, C. A., Yarnell S. M., & Viers J. H. (2016).  Pulsed flow wave attenuation on a regulated montane river. River Research and Applications. 32(5), 1047-1058.
Pinter, N., Brasington J., Gurnell A., Kondolf G. Matthias, Tockner K., Wharton G., et al. (2019).  River research and applications across borders. River Research and Applications. early view online,
Feyrer, F., Whitman G., Young M., & Johnson RC. (2019).  Strontium isotopes reveal ephemeral streams used for spawning and rearing by an imperilled potamodromous cyprinid Clear Lake hitch Lavinia exilicauda chi. Marine and Freshwater Research. https://doi.org/10.1071/MF18264,
Bondi, C., Yarnell S. M., & Lind A. J. (2013).  Transferability of habitat suitability criteria for a stream breeding frog (Rana boylii) in the Sierra Nevada, California. Herpetological Conservation and Biology. 8(1), 88-103.
Obester, A., Lusardi R. A., Santos N. R., Peek R. A., & Yarnell S. M. (2021).  The use of umbrella fish species to provide a more comprehensive approach for freshwater conservation management. Aquatic Conservation: Marine and Freshwater Ecosystems. 1-17.PDF icon Obester et al 2021.pdf (1.67 MB)
Thompson, L., Escobar M., Mosser C., Purkey D., Yates D., & Moyle P. B. (2012).  Water Management Adaptations to Prevent Loss of Spring-Run Chinook Salmon in California under Climate Change . Journal of Water Resources Planning and Management. 138(5), 465-478.PDF icon chinook.pdf (2.46 MB)
Kupferberg, S., Lind A. J., Thill V., & Yarnell S. M. (2011).  Water velocity tolerance in tadpoles of the Foothill yellow-legged frog (Rana boylii): Swimming performance, growth, and survival. Copeia. 1, 141-152.