Publications

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2017
Katz, J., Jeffres C., Conrad L., Sommer T., Martinex J.., Brumbaugh S., et al. (2017).  Floodplain farm fields provide novel rearing habitat for Chinook salmon. PLoS ONE. 12(6), 
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Improved fisheries management through life stage monitoring: the case for the Southern Distinct Population Segment of North American Green Sturgeon and the Sacramento-San Joaquin River White Sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-588, PDF icon NOAA-TM-NMFS-SWFSC-588.pdf (1.53 MB)
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Improved fisheries management through life stage monitoring: the case for the Southern Distinct Population Segment of North American Green Sturgeon and the Sacramento-San Joaquin River White Sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-588, PDF icon NOAA-TM-NMFS-SWFSC-588.pdf (1.53 MB)
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Life history and current monitoring inventory of San Francisco Estuary sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-589, PDF icon NOAA-TM-NMFS-SWFSC-589.pdf (420.07 KB)
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Life history and current monitoring inventory of San Francisco Estuary sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-589, PDF icon NOAA-TM-NMFS-SWFSC-589.pdf (420.07 KB)
Heublein, J., Bellmer R., Chase RD., Doukakis P., Gingras M., Hampton D., et al. (2017).  Life history and current monitoring inventory of San Francisco Estuary sturgeon. NOAA Technical Memorandum . NMFS-SWFSC-589, PDF icon NOAA-TM-NMFS-SWFSC-589.pdf (420.07 KB)
Johnson, RC., Windell S., Brandes P., Conrad JL., Ferguson J., Goertler PAL., et al. (2017).  Science advancements key to increasing management value of life stage monitoring networks for endangered Sacramento River Winter run Chinook salmon in California. San Francisco Estuary and Watershed Science. 13(3), PDF icon Johnson_2017_SFEWS.pdf (3.55 MB)
Windell, S., Brandes PL., Conrad JL., Ferguson JW., Goertler PAL., Harvey BN., et al. (2017).  Scientific framework for assessing factors influencing endangered Sacramento River winter-run Chinook (Oncorhynchus tshawytscha) across the life cycle. NOAA Technical Memorandum . NMFS-SWFSC-586, PDF icon NOAA-TM-NMFS-SWFSC-586_Final.pdf (1.62 MB)
Willis, A., Nichols A. L., Holmes E., Jeffres C., Fowler A. C., Babcock C. A., et al. (2017).  Seasonal aquatic macrophytes reduce water temperatures via a riverine canopy in a spring-fed stream. Freshwater Science. PDF icon Willis et al. 2017 Riverine canopy.pdf (1.16 MB)
Corline, N. J., Sommer T., Jeffres C. A., & Katz J. (2017).  Zooplankton ecology and trophic resources for rearing native fish on an agricultural floodplain in the Yolo Bypass California, USA. Wetlands Ecology and Management. 25, 533–545.
2014
Quiñones, R. M., Johnson M. L., & Moyle P. B. (2014).  Hatchery practices may result in replacement of wild salmonids: adult trends in the Klamath basin, California. Environmental biology of fishes. 97, 233–246.
Quiñones, R. M., & Johnson M. L. (2014).  Hatchery practices may result in replacement of wild salmonids: adult trends in the Klamath basin, California. Environmental Biology of Fishes. 97(3), 233-246.PDF icon Quiñones et al 2013.pdf (486.04 KB)
Bunn, D. A., Moyle P. B., & Johnson C. K. (2014).  Maximizing the ecological contribution of conservation banks. Wildlife Society Bulletin. 38(2), 377–385.
Hanak, E., Gray B. E., Lund J. R., Mitchel D., Phillips-Chappelle C., Fahlund A., et al. (2014).  Paying for Water in California. 81.PDF icon Paying for Water in California (1.14 MB)
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential Factors Affecting Survival Differ by Run-Timing and Location: Linear Mixed-Effects Models of Pacific Salmonids (Oncorhynchus spp.) in the Klamath River, California. PLOS One. 9(5), PDF icon journal.pone_.0098392.pdf (702.76 KB)
Quiñones, R. M., Holyoak M., Johnson M. L., & Moyle P. B. (2014).  Potential factors affecting survival differ by run-timing and location: linear mixed-effects models of Pacific salmonids (Oncorhynchus spp.) in the Klamath River, California. PDF icon Quinones et al 2014 survival linear mixed-effects models.pdf (689.29 KB)
Nichols, A., Willis A., Jeffres C., & Deas M. (2014).  Water Temperature Patterns Below Large Groundwater Springs: Management Implications For Coho Salmon In The Shasta River, California. River Research and Applications. 30(4), PDF icon rra2655.pdf (1.16 MB)
2013
Medellín-Azuara, J., Rosenstock T. S., Howitt R., Harter T., Jessoe K., Dzurella K. N., et al. (2013).  Agro-Economic Analysis of Nitrate Crop Source Reductions. Journal of Water Resources Management and Planning ASCE. 139(5), 11.
Jones, C. A. (2013).  Application of Optimization Modeling to Examine the Benefits of Expanding the Sacramento River Watershed Bypass System. Civil and Environmental Engineering. MS, 81.
Katz, J. V. E., Jeffres C., Conrad L., Sommer T., Corline N. J., Martinez J., et al. (2013).  Experimental Agricultural Floodplain Habitat Investigation at Knaggs Ranch on Yolo Bypass, 2012-2013. PDF icon Knaggs 2013 Preliminary Report (4.12 MB)
Schaefer, M. M., Doyle L. A., Fleenor W. E., & Johnson M. L. (2013).  Fate and Transport of Three Pharmaceuticals in the Sacramento-San Joaquin Delta. Fate and Transport of Three Pharmaceuticals in the Sacramento-San Joaquin Delta. 11(2), PDF icon SFEW Science Nine 2013 (650.98 KB)
Woodson, LE., Well BK., Weber PK., MacFarlane RB., Whitman GE., & Johnson RC. (2013).  Size, growth, and origin-dependent mortality of juvenile Chinook salmon Oncorhynchus tshawytcha.. Marine Ecology Progress Series. 487,
Willis, A., Nichols A., Jeffres C., & Deas M. (2013).  Water Resources Management Planning: Conceptual Framework and Case Study of the Shasta Basin. PDF icon Water Resources Management Planning: Conceptual Framework and Case Study of the Shasta Basin (3.34 MB)
2012
Harter, T., & Lund J. R. (2012).  Addressing Nitrate in California’s Drinking Water: Executive Summary. (Darby, J., Fogg G., Howitt R., Jessoe K., Pettygrove S. G., Quinn J. F., et al., Ed.).Addressing Nitrates in California's Drinking Water.
Harter, T., & Lund J. R. (2012).  Addressing Nitrate in California’s Drinking Water: Executive Summary. (Darby, J., Fogg G., Howitt R., Jessoe K., Pettygrove S. G., Quinn J. F., et al., Ed.).Addressing Nitrates in California's Drinking Water.
Harter, T., & Lund J. R. (2012).  Addressing Nitrate in California’s Drinking Water: Executive Summary. (Darby, J., Fogg G., Howitt R., Jessoe K., Pettygrove S. G., Quinn J. F., et al., Ed.).Addressing Nitrates in California's Drinking Water.
Viers, J. H., Liptzin D., Rosenstock T. S., Jensen V. B., Hollander A. D., McNally A., et al. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 2 - Sources of Nitrate in Groundwater.
Jensen, V. B., Darby J., Seidel C., & Gorman C. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 6 - Treatment of Nitrate in Drinking Water.
Honeycutt, K. L., Canada H. E., Jenkins M. W., & Lund J. R. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 7 - Susceptible Population and Alternative Water Supplies.
Canada, H. E., Harter T., Honeycutt K. L., Jessoe K., Jenkins M. W., & Lund J. R. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 8 - Funding and Policy Options.
Canada, H. E., Harter T., Honeycutt K. L., Jessoe K., Jenkins M. W., & Lund J. R. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 8 - Funding and Policy Options.
King, A. M., Jensen V. B., Fogg G., & Harter T. (2012).  Addressing Nitrate in California’s Drinking Water: Technical Report 5 - Remediation of Groundwater Nitrate.