Publications

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2021
Stein, E. D., Zimmerman J., Yarnell S. M., Stanford B., Lane B. A., Taniguchi-Quan K. T., et al. (2021).  The California Environmental Flows Framework: Meeting the Challenges of Developing a Large-Scale Environmental Flows Program. Frontiers in Environmental Sciences. 9, PDF icon Stein et al-CEFF Development _Frontiers 2021 PUBLISHED.pdf (1.17 MB)
Obester, A., Lusardi R. A., Santos N. R., Peek R. A., & Yarnell S. M. (2021).  The use of umbrella fish species to provide a more comprehensive approach for freshwater conservation management. Aquatic Conservation: Marine and Freshwater Ecosystems. 1-17.PDF icon Obester et al 2021.pdf (1.67 MB)
2020
Young, M., Howe E., O'Rear T., Berridge K., & Moyle P. B. (2020).  Food Web Fuel Differs Across Habitats and Seasons of a Tidal Freshwater Estuary. Estuaries and Coasts. 188,
Yarnell, S. M., Stein E. D., Webb J.A., Grantham T. E., Lusardi R. A., Zimmerman J., et al. (2020).  A functional flows approach to selecting ecologically relevant flow metrics for environmental flow applications. River Research and Applications. 36(2), 318–324.PDF icon Yarnell et al. 2020 RRA (759.84 KB)
2019
Yarnell, S. M., Peek R. A., Keung N., Todd B. D., Lawler S., & Brown C. (2019).  A lentic breeder in lotic waters: Sierra Nevada Yellow-Legged Frog (Rana sierrae) habitat suitability in northern Sierra Nevada streams. Copeia.
Pinter, N., Brasington J., Gurnell A., Kondolf G. Matthias, Tockner K., Wharton G., et al. (2019).  River research and applications across borders. River Research and Applications. early view online,
Feyrer, F., Whitman G., Young M., & Johnson RC. (2019).  Strontium isotopes reveal ephemeral streams used for spawning and rearing by an imperilled potamodromous cyprinid Clear Lake hitch Lavinia exilicauda chi. Marine and Freshwater Research. https://doi.org/10.1071/MF18264,
2018
Steel, A. E., Peek R. A., Lusardi R. A., & Yarnell S. M. (2018).  Associating metrics of hydrologic variability with benthic macroinvertebrate communities in regulated and unregulated snowmelt-dominated rivers. Freshwater Biology. 63(8), 844-858.
Milner, V., Yarnell S. M., & Peek R. A. (2018).  The ecological importance of unregulated tributaries to macroinvertebrate diversity and community composition in a regulated river. Hydrobiologia. 829, 291-305.
2017
Young, M., Berridge K., O'Rear T., Moyle P. B., & Durand J. R. (2017).  Habitat partitioning by native and non-native fishes and decapods in novel habitats of the upper San Francisco Estuary. Biological Invasions.
Lund, J. R., Hui R., Escriva-Bou A., Porse E., Adams L., Connaughton J., et al. (2017).  Reservoir Operation Design. The Handbook of Applied Hydrology.
Rheinheimer, D. E., & Yarnell S. M. (2017).  Tools for sediment management in rivers. Water for the Environment: Policy, Science, and Integrated Management.
2016
Young, M., Perales M., Durand J. R., & Moyle P. B. (2016).  Fish distribution in the cache slough complex of the Sacramento-San Joaquin Delta during a drought. IEP Newsletter.
Forni, L. G., Medellín-Azuara J., Tansey M., Young C., Purkey D., & Howitt R. (2016).  Integrating Complex Economic and Hydrologic Planning Models: An Application for Drought Under Climate Change Analysis. Water Resources and Economics.
Yarnell, S. M., Peek R. A., Epke G., & Lind A. J. (2016).  Management of the Spring Snowmelt Recession in Regulated Systems. JAWRA Journal of the American Water Resources Association. 52, 723-736.
Fong, C. A., Yarnell S. M., & Viers J. H. (2016).  Pulsed flow wave attenuation on a regulated montane river. River Research and Applications. 32(5), 1047-1058.
2015
Podolak, K., & Yarnell S. M. (2015).  Adaptive management in Federal Energy Regulatory Commission relicensing. The Water Sustainability Reader: Lessons from California for the 21st Century. 193-211.
Schroeter, RE., O'Rear T., Young M., & Moyle P. B. (2015).  The aquatic trophic ecology of Suisun Marsh, San Francisco Estuary, California, during autumn in a wet year. San Francisco Estuary and Watershed Science. 13(3), 
Lund, J. R., Harter T., Gailey R., Fogg G., Frank R. M., Dahlke H., et al. (2015).  Creating Effective Groundwater Sustainability Plans.
Lund, J. R., Harter T., Gailey R., Fogg G., Frank R. M., Dahlke H., et al. (2015).  A Detailed Outline for Groundwater Sustainability Plans under California's Sustainable Groundwater Management Act. PDF icon APPENDIX.pdf (64.75 KB)
Yarnell, S. M., Petts G., Schmidt J., Whipple A., Beller E., Dahm C., et al. (2015).  Functional Flows in Modified Riverscapes: Hydrographs, Habitats and Opportunities. BioScience. 65(9), PDF icon BioScience-2015-Yarnell-biosci_biv102.pdf (327.28 KB)
Lund, J. R., Harter T., Gailey R., Fogg G., Frank R. M., Dahlke H., et al. (2015).  A Table of Contents for Groundwater Sustainability Plans under California's Sustainable Groundwater Management Act. PDF icon A Table of Contents.pdf (55.43 KB)
2013
Durand, J. R., De Carion D., Young M., Montgomery J., Perales M., Berridge K., et al. (2013).  Cache Slough and the Northern Arc of Native Fishes.
Rheinheimer, D. E., Yarnell S. M., & Viers J. H. (2013).  Hydropower Costs Of Environmental Flows And Climate Warming In California’s Upper Yuba River Watershed. River Research and Applicatiions. 29(10), 1291-1305.
Yarnell, S. M., Peek R. A., Rheinheimer D. E., Lind A. J., & Viers J. H. (2013).  Management of the Spring Snowmelt Recession. 137.PDF icon CEC_Recsn_Limb_Draft_Final_Report.pdf (8 MB)PDF icon Management of the Spring Snowmelt Recession in Regulated Systems (AGU 2013 presentation) (1.87 MB)
Viers, J. H., Purdy S., Peek R. A., Fryjoff-Hung A., Santos N. R., Katz J. V. E., et al. (2013).  Montane Meadows in the Sierra Nevada: Changing Hydroclimatic Conditions and Concepts for Vulnerability Assessment. Center for Watershed Sciences Technical Report. 63.PDF icon Montane Meadows in the Sierra Nevada: Changing Hydroclimatic Conditions and Concepts for Vulnerability Assessment. CWS Report (4.08 MB)
Skiles, T. D., Yoshiyama R. M., & Moyle P. B. (2013).  Pink salmon (Oncorhynchus gorbuscha) in the Salinas River, California: a new record and historical perspectives. California Fish and Game. 99(1), 55-59.
Yarnell, S. M. (2013).  Stream Habitat Associations of the Foothill Yellow-Legged Frog (Rana boylii): The Importance of Habitat Heterogeneity. Ecohydraulics: An Integrated Approach. 193-212.PDF icon Chapter 11 in Ecohydraulics: An Integrated Approach (3.99 MB)
Bondi, C., Yarnell S. M., & Lind A. J. (2013).  Transferability of habitat suitability criteria for a stream breeding frog (Rana boylii) in the Sierra Nevada, California. Herpetological Conservation and Biology. 8(1), 88-103.
2012
Yarnell, S. M., Lind A. J., & Mount JF. (2012).  Dynamic flow modelling of riverine amphibian habitat with application to regulated flow management. River Research and Applications. 28, 177-191.
Durand, J. R., Chandos A., De Carion D., Fleenor W. E., Hobbs J. A., Montgomery J., et al. (2012).  Identifying Habitat Characteristics of the North Delta Arc.
Yarnell, S. M., Yager E., Kenworthy M., Merrit D., & Lind A. J. (2012).  Impacts of Flow Recession Dynamics on Channel Bar Morphology. 30.
Yarnell, S. M., Yager E., Kenworthy M., Merrit D., & Lind A. J. (2012).  Impacts of Flow Recession Dynamics on Channel Bar Morphology. 30.
Thompson, L., Escobar M., Mosser C., Purkey D., Yates D., & Moyle P. B. (2012).  Water Management Adaptations to Prevent Loss of Spring-Run Chinook Salmon in California under Climate Change . Journal of Water Resources Planning and Management. 138(5), 465-478.PDF icon chinook.pdf (2.46 MB)
2011
Yarnell, S. M., Bondi C., Lind A. J., & Peek R. A. (2011).  Habitat Models for the Foothill yellow-legged frog (Rana boylii) in the Sierra Nevada of California. 139.PDF icon Yarnell et al FYLF modeling final report CWS.pdf (3.69 MB)
Kupferberg, S., Lind A. J., Thill V., & Yarnell S. M. (2011).  Water velocity tolerance in tadpoles of the Foothill yellow-legged frog (Rana boylii): Swimming performance, growth, and survival. Copeia. 1, 141-152.
2010
Yarnell, S. M., Viers J. H., & Mount JF. (2010).  Ecology and Management of the Spring Snowmelt Recession. Bioscience. 60(2), 
Yoshiyama, R. M., & Moyle P. B. (2010).  Historical Review of Eel River Anadromous Salmonids, with Emphasis on Chinook Salmon, Coho Salmon and Steelhead. PDF icon Eel River Final Report, Feb. 2010 (1.34 MB)
Suddeth, R., De Carion D., Epke G., Hilton P., Holmberg D., Stouthamer C., et al. (2010).  Natural History Guide to the Tuolumne River.
2009
Young, C., Escobar M., Fernandes M., Joyce B., Kiparsky M., Mount JF., et al. (2009).  Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6), 
Young, C., Escobar M., Fernandes M., Joyce B., Kiparsky M., Mount JF., et al. (2009).  Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6), 
Mount, JF., Yarnell S. M., Kupferberg S., & Lind A. J. (2009).  Pulsed Flow Effects on the Foothill Yellow-Legged Frog (Rana boylii): Integration of Empirical, Experimental and Hydrodynamic Modeling.
2008
Rojas, H. R. Guerrer, Yúnez-Naude A., & Medellín-Azuara J. (2008).  El Agua en Mexico: Consecuencias de las politicas de intervencion en el sector. Lecturas El Trimestre Economico 100. 100, 222.
Yarnell, S. M. (2008).  Quantifying physical habitat heterogeneity in an ecologically meaningful manner: A case study of the habitat preferences of the Foothill yellow-legged frog (Rana boylii). Landscape Ecology Research Trends.
2007
Adams, P. B., Botsford L. W., Gobalet K. W., Leidy R. A., McEwan D. R., Moyle P. B., et al. (2007).  Coho Salmon are Native South of San Francisco Bay: A Reexamination of North American Coho Salmon's Southern Range Limit. Fisheries. 32(9), 441-451.
2006
Yarnell, S. M., Mount JF., & Larsen E. W. (2006).  The influence of relative sediment supply on riverine habitat heterogeneity. Geomorphology. 80, 310-324.
2001
Yoshiyama, R. M., Gerstung E. R., Fisher F. W., & Moyle P. B. (2001).  Historical and present distribution of Chinook salmon in the Central Valley drainage of California. (Brown, R. L., Ed.).Contributions to the Biology of Central Valley Salmonids. 71-176.
2000
Yoshiyama, R. M., Moyle P. B., Gerstung E. R., & Fisher F. W. (2000).  Chinook Salmon in the California Central Valley: An Assessment. Fisheries. 25(2), 6-20.
1998
Yoshiyama, R. M., Fisher F. W., & Moyle P. B. (1998).  Historical Abundance and Decline of Chinook Salmon in the Central Valley Region of California. North American Journal of Fisheries Management. 18(3), 487-521.
1997
Moyle, P. B., & Yoshiyama R. M. (1997).  The role of adaptive management in restoring chinook salmon to the Tuolumne River. (Wang, S. S. Y., & Carstens T., Ed.).Environmental and Coastal Hydraulics: Protecting the Aquatic Habitat. 557-562.