Alien Fishes in Natural Streams: Fish Distribution, Assemblage Structure, and Conservation in the Cosumnes River, California, U.S.A.. Environmental Biology of Fishes. 68(2), 143-162.(2003).
Endangered and Threatened Fishes in the Klamath River Basin: Causes of Decline and Strategies for Recovery. 334.(2004).
Managing Surface Water-Groundwater to Restore Fall Flows in the Cosumnes River. ASCE Journal of Water Resources Planning and Management. 130(4),(2004).
Simulated changes in shallow groundwater and vegetation distributions under different reservoir operations scenarios.. Ecological Applications. 14, 192-207.(2004).
Delta Levee Vulnerability Study. San Francisco Estuary and Watershed Science. 3(1),(2005).
Subsidence, sea level rise, and seismicity in the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 3(1),(2005).
The influence of relative sediment supply on riverine habitat heterogeneity. Geomorphology. 80, 310-324.(2006).
Baseline Assessment of Salmonid Habitat and Aquatic Ecology of the Nelson Ranch, Shasta River, California Water Year 2007.(2007).
Homogenous rivers, homogenous faunas. Proceedings of the National Academy of Sciences. 104(14), 5711-5712.(2007).
The Economic Costs and Adaptations for Alternative Delta Regulations Technical Appendix F. Comparing Futures for the Sacramento-San Joaquin Delta..(2008).
Economic Effects on Agriculture of Water Export Salinity South of the Sacramento-San Joaquin Delta. (Lund, J. R., Hanak E., Fleenor W. E., Bennett W. A., Howitt R., Mount JF., et al., Ed.).Comparing Futures for the Sacramento-San Joaquin Delta.(2008).
Quantifying the hydrological effects of stream restoration in a montane meadow, northern California, USA. River Research and Applications. 24, 735–753.(2008).
Baseline Assessment of Physical and Biological Conditions Within Waterways on Big Springs Ranch, Siskiyou County, California.(2009).
Modeling the Hydrology of Climate Change in California's Sierra Nevada for Subwatershed Scale Adaptation. Journal of the American Water Resources Association. 45(6),(2009).
Pulsed Flow Effects on the Foothill Yellow-Legged Frog (Rana boylii): Integration of Empirical, Experimental and Hydrodynamic Modeling.(2009).
Vegetation and water-table relationships in a hydrologically restored riparian meadow. Wetlands. 29, 785–797.(2009).
Comparing Futures for the Sacramento-San Joaquin Delta. Freshwater Ecology Series. 3, 231.(2010).
Comparing Futures for the Sacramento-San Joaquin Delta. Freshwater ecology series. 230.(2010).
Ecology and Management of the Spring Snowmelt Recession. Bioscience. 60(2),(2010).
Hydrologic Response and Watershed Sensitivity to Climate Warming in California’s Sierra Nevada. PLoS ONE. 5(4),(2010).
Levee Decisions and Sustainability for the Sacramento-San Joaquin Delta. San Francisco Estuary and Watershed Science. 8(2),(2010).
Longitudinal Baseline Assessment of Salmonid Habitat Characteristics of the Shasta River, March through September, 2008.(2010).
Myths of California water: implications and reality. West Northwest. 3-73.(2010).
Simulated Effects of Stream Restoration on the Distribution of Wet-Meadow Vegetation. Restoration Ecology. 18, 882–893.(2010).
Environmental heterogeneity and community structure of the Kobuk River, Alaska, in response to climate change. Ecosphere. 2(4), 1-19.(2011).
Dynamic flow modelling of riverine amphibian habitat with application to regulated flow management. River Research and Applications. 28, 177-191.(2012).
Stream temperature sensitivity to climate warming in California’s Sierra Nevada: impacts to coldwater habitat. Climatic Change. 1-22.(2012).
Where the Wild Things Aren’t Making the Delta a Better Place for Native Species. Public Policy Institute of California.(2012).
The Draft Bay-Delta Conservation Plan: Assessment of Environmental Performance and Governance. West-Northwest Journal of Environmental Law & Policy.(2014).
Agricultural Irrigation in This Drought: Where Is the Water and Where Is It Going?. Agricultural and Resources Economics Update. 18(5), 6-8.(2015).
Economics of the Drought for California Food and Agriculture . Agricultural and Resources Economics Update. 15p.(2015).
Ten ways U.S. agencies and Congress can help ease the drought in California and other western states. California WaterBlog.(2015).
Managing California's Freshwater Ecosystems: Lessons from the 2012-16 Drought.. Public Policy Institute of California.(2017).